General information for g1626.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as GPI inositol-deacylase.
Parent gene
- The parent gene g1626 is located on chr_3: 12208477..12212886 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1626 | g1626.t1 | TSS | g1626.t1 | 12208391 | 12208391 |
| chr_3 | g1626 | g1626.t1 | isoform | g1626.t1 | 12208477 | 12212886 |
| chr_3 | g1626 | g1626.t1 | exon | g1626.t1.exon1 | 12208477 | 12208620 |
| chr_3 | g1626 | g1626.t1 | cds | g1626.t1.CDS1 | 12208477 | 12208620 |
| chr_3 | g1626 | g1626.t1 | exon | g1626.t1.exon2 | 12209529 | 12211763 |
| chr_3 | g1626 | g1626.t1 | cds | g1626.t1.CDS2 | 12209529 | 12211763 |
| chr_3 | g1626 | g1626.t1 | exon | g1626.t1.exon3 | 12211926 | 12212491 |
| chr_3 | g1626 | g1626.t1 | cds | g1626.t1.CDS3 | 12211926 | 12212491 |
| chr_3 | g1626 | g1626.t1 | exon | g1626.t1.exon4 | 12212637 | 12212886 |
| chr_3 | g1626 | g1626.t1 | cds | g1626.t1.CDS4 | 12212637 | 12212886 |
| chr_3 | g1626 | g1626.t1 | TTS | g1626.t1 | 12213906 | 12213906 |
Sequences
>g1626.t1 Gene=g1626 Length=3195
ATGGCAGCTAATGTGATTTTCTTGGTTTTTGCACTTGTATGTTTCGGTTTTTATTTTTAC
GGCGGCTTTGTGACAATTAGCTCAATAAATAGTGATAAAAATGATTGTAAAATGACATTT
ATGTTTGAACATCCAAACTATGTGAGAATCAATTTTAAGGAAAATGACAATTTCCCACGA
TATAATTTATACGCTTATGCTGAAGGACATTTGACTGTGAATGCACGAAATATGATGTTC
TCAGGTGCTCCTGTATTATTTATACCAGGAAATAGTGGAAGTTACAAACAAAGTCGCTCA
CTTGCAAGTGTCGCTTTACGAAAGGGAATTGATAATGATTGGTTTCACCATCTGGATTAT
TTCACAGTCGATCTCAATGAAGAATATTCGGCACTTTTTGGTGGTGTTTTAGAAGAACAA
GCAAAATTTATTGAACATGCAATTCGTGCCATATTAAAACTTTATGAAAGACTCAAATTT
CCACCAAAGAAATTAATTGTTATTGGTCATTCAATTGGTGGAAAATTAGTTCAAAAATTG
CTAACATCACCTGACACTGCTAATCTTATTAATTCTGTAATCACCTTAGCATCTCCAATG
GACAAACCAGTATTAAATTGGGATTTATATATCAATAATTTTTATCAATCAATTGACAAT
TATTGGATGGAAAATCGACAAATTATTGAAAATTCAAATAATAATTCATGTGGTAGCAAT
TGTCGACCTTCTGCATTGACAACAATTGATGATCAGAAGAAATTACTTGATGATAAACTT
CTTATAACAATTGGTGGTGGCAGTAAAGATTTACTTGTCCATTCTGGTTTAACAGATTCA
AAATTTAGTGATTTACATGTAATGTCAACAGCAATGTCAAAAGTTTGGGTTGAAAGTGAT
CATTTATGCATTGTTTGGTGCCTTCAGCTTGTCCTAGTCGTCAATCGATTTCTTTATAGC
ATTATTGCACCAGTCAAATATAAAGGAAGCAATTCAAAAGGTTTAAGTTTCATTGAAGAT
AAAACAACACGATTAGCTAAAGCTGAATATCATTTTCTTGGAATGAAAAGCAATTTTGAT
AGTGGAAAAATGAAGAAACTTGAATCACCAATTCAAGCTGAATGGTTTGAAGATAATCGA
AGAATTTTTACTGAGAAATTCAAAAATGGAATAAATAAAACAAGAATTCAAATGATTCGA
TTAATTGACAACATTCTTCATCGTGCTGTAAAAATTGATGTGATAAATCAAGAAACAAAA
GATTGGGTTTTTGGATGTGAAGCTGCTGAAATTACTGGAATGTCACGTTATTGCAGCAAT
GCTGTTTCATTATCAAATTATACTGTAATGATTCCAAGTGAATTGCCTGATCGAGTTTCA
CTTTCTTTAAATCTTCACGAGTTGAAATTAAAGAATCCAAAATGGACTCATGTGCTGCTA
AAATTTGCACCAACACGTGAACCATTTCAATTTACAATTGACATACATAATCCATCAGAT
CGTGAAATAAAAATTGCAATGCCGAAATGGTATTCATTTGGTAAAATTAATGTTTTAGAT
GACACGTTACTTGGTGCATCACATTATCAATTACAAATATCTGGATTAGAAGAAACTCAT
CAAGCACTTGAACTTATTTTAACACCAAAACATTGCACAAAACATCAAACGATGGCCAAA
GTTTGTGTACCATGGACCAAAGGATTTGATAGATATCACAGTTTTTCAGATGATGACAAA
ATGATAATTTGGACACCGGAATCGAGACCATTAAATTATAATACAACTCAAAATTCATTG
ACAGTCGATTTATTACTTGATTCCGATTGTCGTTATTCAATCGCAATTCGTCAATCACTT
GGTCAAATGTTGTCTAAAATAGTTCAACAATTTTCACATTGGCTGCCTGCTCATCTTGTT
GCCATTTTGTGCCTTTCACTTAAACATCAATTGACAGTCACACCAAAAGGTGAAAAATTT
AAATGTGGATCTTTTCATAAAGCTTTGGCAACTTGCACGCCTTTCTTTGTCATAACTGTT
TCGCGATTATTTTTCAAATTTATTCTTATGCTGAAAATTCTACCAAAGCCTGAAACTTTG
CCAACATCACTGACAGTTTCTATTATAATCCATGGAGCAGCACTGGCAATGCTGATAATT
TTGACTGGACTAATGTGGGCAGGAATTACATTTTTTGGAAGCATCGCTCATAAATTGCTA
TTTAAAATTGTTCATTTACCAATTCCAATTATTTCTGATGCTGTTGTTTCAATAATTGAA
AAATTTCCTATCTCTGTTGCTGCTGTTTTGGTTTCATTAGTTCATGCATCATGTGGTGGA
ATTGCCTTAGTTGTTGCTTGCATTGTTTATTTTATTTTGTTATCAAAAATGTATGAAGAT
TATCTTGAAAATTTTGTCTTTAAAACTGCAAAGTTTATCGCAATGAAACTTTTTGGACGA
GTAAGAAAGCCTAAAAATGACCAAAATGAAGAGAAAGAATCAGATGAGACTGAAAAAACT
GAACCAAATGAAGCTAAAAATAAAAGTGATCTCAAAAAAGATGAAAATGAAGGTGAAACT
AGTCAATCATTGATGAAATCAGATTCACAGTCAGATTTATTAAATGACGAAAATGAAGAA
GTTGAAAAAATGTTGGATGAAATGATGAAAAAGCAACGTGAAGAAAAACTGAAAAGTGAA
AAAGAAAATGCTGCATCAAGAGTCGAATATGATTCATTAACTGAAGGACTTGATGAAATC
AACTTTCATTTGCCTATTTTCTTCTTATTGGTTGTGATTACAATTCTTAGTATGCCAAGT
GTTGTTACTTGGGCTAAAAATTATCATTATGCAAGAATTTTGACACCTGATCCAATGAAA
ATTTCAGCAACAGCTGTTTTGGTATCACTCGGTGTTATTTGGCAATTGAATACACCTAGA
GATGTTCTCGGCTACAAATACATTGGCAGTTTTCTATACATCATTGCAGTGATTGCAGTT
TTATATTGTCAAGATGCAATCTATCGACTCAATTTCATCATAACTGGAACGTTTATTCTC
ATCGCTTTACATCAGTTGTTATCACCTAAACAAAAACATATCACTGATGAATTGCCAAGT
GCAGCCGATTTTTTTGATAAAATGAAAAACAATTATGACAGATTTAAACTTGCAAAAGGC
TTCATTAGTCGATAA
>g1626.t1 Gene=g1626 Length=1064
MAANVIFLVFALVCFGFYFYGGFVTISSINSDKNDCKMTFMFEHPNYVRINFKENDNFPR
YNLYAYAEGHLTVNARNMMFSGAPVLFIPGNSGSYKQSRSLASVALRKGIDNDWFHHLDY
FTVDLNEEYSALFGGVLEEQAKFIEHAIRAILKLYERLKFPPKKLIVIGHSIGGKLVQKL
LTSPDTANLINSVITLASPMDKPVLNWDLYINNFYQSIDNYWMENRQIIENSNNNSCGSN
CRPSALTTIDDQKKLLDDKLLITIGGGSKDLLVHSGLTDSKFSDLHVMSTAMSKVWVESD
HLCIVWCLQLVLVVNRFLYSIIAPVKYKGSNSKGLSFIEDKTTRLAKAEYHFLGMKSNFD
SGKMKKLESPIQAEWFEDNRRIFTEKFKNGINKTRIQMIRLIDNILHRAVKIDVINQETK
DWVFGCEAAEITGMSRYCSNAVSLSNYTVMIPSELPDRVSLSLNLHELKLKNPKWTHVLL
KFAPTREPFQFTIDIHNPSDREIKIAMPKWYSFGKINVLDDTLLGASHYQLQISGLEETH
QALELILTPKHCTKHQTMAKVCVPWTKGFDRYHSFSDDDKMIIWTPESRPLNYNTTQNSL
TVDLLLDSDCRYSIAIRQSLGQMLSKIVQQFSHWLPAHLVAILCLSLKHQLTVTPKGEKF
KCGSFHKALATCTPFFVITVSRLFFKFILMLKILPKPETLPTSLTVSIIIHGAALAMLII
LTGLMWAGITFFGSIAHKLLFKIVHLPIPIISDAVVSIIEKFPISVAAVLVSLVHASCGG
IALVVACIVYFILLSKMYEDYLENFVFKTAKFIAMKLFGRVRKPKNDQNEEKESDETEKT
EPNEAKNKSDLKKDENEGETSQSLMKSDSQSDLLNDENEEVEKMLDEMMKKQREEKLKSE
KENAASRVEYDSLTEGLDEINFHLPIFFLLVVITILSMPSVVTWAKNYHYARILTPDPMK
ISATAVLVSLGVIWQLNTPRDVLGYKYIGSFLYIIAVIAVLYCQDAIYRLNFIITGTFIL
IALHQLLSPKQKHITDELPSAADFFDKMKNNYDRFKLAKGFISR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1626.t1 | Coils | Coil | Coil | 871 | 898 | - |
| 4 | g1626.t1 | Gene3D | G3DSA:3.40.50.1820 | - | 82 | 318 | 1.3E-14 |
| 37 | g1626.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 861 | - |
| 38 | g1626.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 875 | - |
| 2 | g1626.t1 | PANTHER | PTHR15495 | NEGATIVE REGULATOR OF VESICLE FORMATION-RELATED | 6 | 1040 | 1.6E-138 |
| 1 | g1626.t1 | Pfam | PF07819 | PGAP1-like protein | 80 | 320 | 9.5E-67 |
| 14 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 5 | - |
| 26 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 6 | 29 | - |
| 10 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 30 | 301 | - |
| 22 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 302 | 322 | - |
| 15 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 323 | 630 | - |
| 23 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 631 | 647 | - |
| 7 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 648 | 667 | - |
| 18 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 668 | 688 | - |
| 17 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 689 | 707 | - |
| 20 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 708 | 732 | - |
| 9 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 733 | 738 | - |
| 27 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 739 | 759 | - |
| 16 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 760 | 764 | - |
| 24 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 765 | 793 | - |
| 8 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 794 | 925 | - |
| 28 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 926 | 946 | - |
| 12 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 947 | 957 | - |
| 25 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 958 | 976 | - |
| 6 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 977 | 982 | - |
| 21 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 983 | 1002 | - |
| 13 | g1626.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1003 | 1007 | - |
| 19 | g1626.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1008 | 1027 | - |
| 11 | g1626.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1028 | 1064 | - |
| 3 | g1626.t1 | SUPERFAMILY | SSF53474 | alpha/beta-Hydrolases | 82 | 238 | 3.56E-13 |
| 33 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
| 32 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 673 | 695 | - |
| 35 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 708 | 730 | - |
| 29 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 772 | 794 | - |
| 31 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 922 | 944 | - |
| 30 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 959 | 976 | - |
| 34 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 983 | 1002 | - |
| 36 | g1626.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1006 | 1028 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | MF |
KEGG
Orthology
- This transcript has been annotated with K05294 (GPI inositol-deacylase [EC:3.-.-.-])
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
