Gene loci information

Transcript annotation

  • This transcript has been annotated as Glycerol-3-phosphate acyltransferase 1, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1627 g1627.t1 TSS g1627.t1 12216136 12216136
chr_3 g1627 g1627.t1 isoform g1627.t1 12216426 12223541
chr_3 g1627 g1627.t1 exon g1627.t1.exon1 12216426 12216490
chr_3 g1627 g1627.t1 cds g1627.t1.CDS1 12216426 12216490
chr_3 g1627 g1627.t1 exon g1627.t1.exon2 12220855 12221044
chr_3 g1627 g1627.t1 cds g1627.t1.CDS2 12220855 12221044
chr_3 g1627 g1627.t1 exon g1627.t1.exon3 12221103 12221177
chr_3 g1627 g1627.t1 cds g1627.t1.CDS3 12221103 12221177
chr_3 g1627 g1627.t1 exon g1627.t1.exon4 12221466 12223541
chr_3 g1627 g1627.t1 cds g1627.t1.CDS4 12221466 12223541
chr_3 g1627 g1627.t1 TTS g1627.t1 12224373 12224373

Sequences

>g1627.t1 Gene=g1627 Length=2406
ATGGTCGGCATTCTTGAAGTGTTCATTTTCATGTGTATATTTGCCTATTTCATTGGCAAA
AATCGCACGGGCACAATGATTGATATATTAACAACAAGATTCCATGATGCTTATACTTAT
TGGAAGTCAGAAAGTGGAGTTGCTCATGTAGGGAATAATAATGATTTAATAAACTATCGG
CACAATAATAACATCAATAAATCTAATGGTGATATCAAAAAAGGCAGTAATGGATGGATC
GATAAAAACATTCAATCAAACAATGATGATGATTCAATGTTACAAATCGATGGCTTGATT
TGTGCTGATTGTTCAAAAAATTTGAATAGAGAACCACAAATATCAGCTCACGATCGTGCA
AAAGCAGCTGTTGACATTCTTAAAGAAACAACACACGTTAATCGTAAAGGCTATGATTGG
GCTTCATTCTTTCCTCATCTTGCTCAAAATATTCGTGTGAAAAAGTACGAATATAAGCCA
GTTTTTGAGAAAGTTCTTAAACATAAACGTTTACAAAGAGAAATTGAAAGAGTCGCAAAA
GATGCAGTTCGTGAAAGTGATGTTTCTTTTGAAATGGAAGACATTTATTACGAGCAAATG
TTGGAAAAATGCAAGAAAAAAGCTTACAAAATGCTTGTTACAATGCGTTGTACATTGTCA
GATAAACTTTTGCGACTCACTTCTTATGTTCTTTACAAATTACTGCCAATTTTCCTTTCT
GGTGTGGTCGCTCATCCAGCACATATTGAAATGTTAAAAGTTGCACAAAAGAAAATGCCA
AATACACCACTTATTTTTATGCCAGTTCATCGAAGTCATTTAGATTACATTATGGTCACA
TTCATTTTGCTCAATCATGATATAAAATGTCCACAAGTCTGTTCTGGTGACAATTTAAAT
ATTCCAGTTTTTGGCTTTCTTTTACGTGGTCTTGGTGCATTTTATATCAAAAGAAAAATT
GATGCAGCTGATGGCAAAAAAGATTACATTTATCGTGGATTGCTTCAAACTTATATGGAA
GAAAGCATTGCAGCTGGTCATAATTTAGAATTTTTCATTGAAGGAGGAAGAACAAGAACA
GGAAAGCCAGCAATGCCAAAAGGTGGAATTTTATCGGTAATCATTGATGCATTTGTCAAT
AATTTAATTGATGATGCAATTCTTGTGCCTGTTTCAATAAATTATGAGAAACTTGTTGAT
GGAAGTTTTGTAAGAGAACAAATGGGAACACCAAAAAAGAAGGAATCATTTAGAAAAGCA
ATTGCAAGTATTTGGAAAGTTTTAAATGCAAAATATGGACAAATGAGAATTGATTTTAAT
GAGCCATTTTCACTTAAAGAACTTGTACATTCATTTAAGGAAAGAAGAACAAGTGTTCCA
AGACCATTAACTTCAAGTCGTAAACTTATGTCAAGACAATCAATTAATTCAGCATATGGC
ATTGAAGTTGATGACAAACATCGAGTACTTGTTGACAATATTGCACGTCATGTTATTTAC
GATTGTTGTGCTGCTATGTCAATAATGTCAACAAATGCAGTTTCCTTTTTATTACTTAAT
AAACATCGACATGGTGCAACAATTAAAGAACTCTCAAAATCATTAGATGAATTAAGAGAT
AAATTTGAAGGCAAAAGAGATTTTGGTTTTGATGGACCATCAGAAAATGTAATTATGACT
GCCATAGAACTTCTTGGTGAAGACATGATAAAAACAAAAGTCACAGAAAATGGAGAAAAA
TTTATTGCACCGATTTTGTCAGTTCCAAATGTTATAGAAACTTTTTATTATTCCAATACA
TTTGTGCCACACATTGCACTTGAGGCTGCTATAATTGTTGGTTCTGTAGCTGCATTAAAG
GAAAATAACTTGACATCATTGACATTGAATGATATTATTGATTCTACATTACTCTATTGT
GATGTTTTGAGAAATGAATTTATTTTTAGCAAACCCTGCCAAGAAATGAGTGATTTAATT
GAAAATGCTGTGACACAATTATGTCAATGGGGAAGAATAAAGAAAATTGACAATGAAGAA
TTTGAAATTGACGAAGAAAAAACAAAAATTCTTTTATCAACACTTGCACCACTTAATGTC
ACTTATTGGCAAACGACTGAATGTTTAAGAGAAATTTTTGAAAAGCAGCATATGCTTGAA
AGTGAATTTATTAAATTATGCATTAAACAAATCACAAAGAAATTTAACAAAGGTGAAATC
ACTTATGGCGAAGCAATTTCAACTGACTCAATAAGAAATTGTCTTAAATTACTTGAAAAA
TGGAGCGTAATTGAAATTGATAACCAAAGTGGAGTTCGAATAATTTTATTAAATTCACTT
TATAACTCAAAAACTGCTGTTGAAAGTGTTATTGAAAAAATTCATAAATTTGTGATTTTA
AAGTAG

>g1627.t1 Gene=g1627 Length=801
MVGILEVFIFMCIFAYFIGKNRTGTMIDILTTRFHDAYTYWKSESGVAHVGNNNDLINYR
HNNNINKSNGDIKKGSNGWIDKNIQSNNDDDSMLQIDGLICADCSKNLNREPQISAHDRA
KAAVDILKETTHVNRKGYDWASFFPHLAQNIRVKKYEYKPVFEKVLKHKRLQREIERVAK
DAVRESDVSFEMEDIYYEQMLEKCKKKAYKMLVTMRCTLSDKLLRLTSYVLYKLLPIFLS
GVVAHPAHIEMLKVAQKKMPNTPLIFMPVHRSHLDYIMVTFILLNHDIKCPQVCSGDNLN
IPVFGFLLRGLGAFYIKRKIDAADGKKDYIYRGLLQTYMEESIAAGHNLEFFIEGGRTRT
GKPAMPKGGILSVIIDAFVNNLIDDAILVPVSINYEKLVDGSFVREQMGTPKKKESFRKA
IASIWKVLNAKYGQMRIDFNEPFSLKELVHSFKERRTSVPRPLTSSRKLMSRQSINSAYG
IEVDDKHRVLVDNIARHVIYDCCAAMSIMSTNAVSFLLLNKHRHGATIKELSKSLDELRD
KFEGKRDFGFDGPSENVIMTAIELLGEDMIKTKVTENGEKFIAPILSVPNVIETFYYSNT
FVPHIALEAAIIVGSVAALKENNLTSLTLNDIIDSTLLYCDVLRNEFIFSKPCQEMSDLI
ENAVTQLCQWGRIKKIDNEEFEIDEEKTKILLSTLAPLNVTYWQTTECLREIFEKQHMLE
SEFIKLCIKQITKKFNKGEITYGEAISTDSIRNCLKLLEKWSVIEIDNQSGVRIILLNSL
YNSKTAVESVIEKIHKFVILK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g1627.t1 CDD cd07993 LPLAT_DHAPAT-like 239 450 2.93261E-84
7 g1627.t1 Coils Coil Coil 521 541 -
2 g1627.t1 PANTHER PTHR12563:SF21 BCDNA.GH07066 107 797 2.8E-172
3 g1627.t1 PANTHER PTHR12563 GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 107 797 2.8E-172
1 g1627.t1 Pfam PF01553 Acyltransferase 257 393 3.4E-16
6 g1627.t1 SMART SM00563 plsc_2 264 396 1.9E-24
5 g1627.t1 SUPERFAMILY SSF69593 Glycerol-3-phosphate (1)-acyltransferase 243 448 4.18E-17
4 g1627.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 19 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0044255 cellular lipid metabolic process BP
GO:0016746 acyltransferase activity MF
GO:0008374 O-acyltransferase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values