General information for g16279.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16279 is located on chr_4: 8953428..8954579 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16279 | g16279.t1 | isoform | g16279.t1 | 8953428 | 8954579 |
| chr_4 | g16279 | g16279.t1 | exon | g16279.t1.exon1 | 8953428 | 8954579 |
| chr_4 | g16279 | g16279.t1 | cds | g16279.t1.CDS1 | 8953428 | 8954579 |
| chr_4 | g16279 | g16279.t1 | TTS | g16279.t1 | 8954084 | 8954084 |
| chr_4 | g16279 | g16279.t1 | TSS | g16279.t1 | 8954614 | 8954614 |
Sequences
>g16279.t1 Gene=g16279 Length=1152
ATGTCAGAAATTAAATGCAATTTTGATTATATGTACGGACATTATCGATGTCATATTGAC
AAGCAAAAACTAACAGAAGGTCAAATAATCATAAAAGGTTCACATGTTGATGGAAAAACA
AACAAAGATGTAAAATGGCTCGATTTTAGTGATTGCAATTTTATCAATTTTCCAAGAAAT
CTTCAAGACTTTTTCCCTAATATAATCAGTTTAAGAATTGATTGCTCCAAACTTGAGAAA
ATTTCACGTGAAGATTTTAGAAAATGGAAAAATTTGGTTTATTTTCGTATTGAAAATTGT
GGACTAAAATGTCTCAAGGGTGACATTTTTAGAGACTTAAAAGACCTTTGGCATATTTCA
TTTAAAAACAACGAAATTAAAGAAATTGAGCCAGAAATTATTGATGGATTAACGAAATTG
AAACATTTGGATTTTCGTGGAAATGTTAATATTGACTTATGGTATGATGCTGGCATTAAA
AGCAACACATTGAGCGAAATTAAAAAAGAAATTAAAGATAAATGTAAACCAAAATCTGAT
GAGACAAATAAAATTCAAAAATTAGAAGAAAAAATTGAAAAAATGTCAATTGACATTGAA
AAATTGAAAGAAGAAAATTTGAGGCTTAATTTGCTAATGGAAATTGTTGTTGCTGAAAGT
TCCTTCAAAGAATTTACAATAAATGTTGGAAAAACTTCATTTAAAATTGACAAAATTCTT
TTTGCATCACAAAGTACGAGATTGGCTGAAATTTTCAGAGACTATCCGGAAGCTAAAGAA
TTCAAACTTGAAGATACTTCAGAGAAAACTTTTCAAAATGTTTTCGATTTTATCTGCACT
AATGAAATACCTGAAAATGCAAATCTTATTGAACTTTTTGTTGCTGCTAATCGACTCAAA
ATTCATACTTTAATAAAAGCCGTTGCTGAAATATTAATTGAAAATATTGATGAGTCAAAT
TCTTTTGAAATTTTGGTAATTGCCAATCGATTCAATCATGACAAATTGAGAGAAAAAGCT
TTTGAAAATATAAAAACCAAAATTTTTCCATTCAAAAGTTTAGATGAAAATTTGGCAAAA
CAACCTGAAAAATTGAGAAACATGATTGAAATGAAGAGGAAAATTGATCAAGAATTTGAA
AATTTAAAATAA
>g16279.t1 Gene=g16279 Length=383
MSEIKCNFDYMYGHYRCHIDKQKLTEGQIIIKGSHVDGKTNKDVKWLDFSDCNFINFPRN
LQDFFPNIISLRIDCSKLEKISREDFRKWKNLVYFRIENCGLKCLKGDIFRDLKDLWHIS
FKNNEIKEIEPEIIDGLTKLKHLDFRGNVNIDLWYDAGIKSNTLSEIKKEIKDKCKPKSD
ETNKIQKLEEKIEKMSIDIEKLKEENLRLNLLMEIVVAESSFKEFTINVGKTSFKIDKIL
FASQSTRLAEIFRDYPEAKEFKLEDTSEKTFQNVFDFICTNEIPENANLIELFVAANRLK
IHTLIKAVAEILIENIDESNSFEILVIANRFNHDKLREKAFENIKTKIFPFKSLDENLAK
QPEKLRNMIEMKRKIDQEFENLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g16279.t1 | CDD | cd18186 | BTB_POZ_ZBTB_KLHL-like | 225 | 299 | 4.32924E-8 |
| 9 | g16279.t1 | Coils | Coil | Coil | 178 | 219 | - |
| 8 | g16279.t1 | Coils | Coil | Coil | 365 | 383 | - |
| 6 | g16279.t1 | Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 3 | 158 | 4.5E-20 |
| 7 | g16279.t1 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 189 | 347 | 4.8E-20 |
| 1 | g16279.t1 | Pfam | PF13855 | Leucine rich repeat | 91 | 148 | 1.9E-8 |
| 2 | g16279.t1 | Pfam | PF00651 | BTB/POZ domain | 221 | 315 | 1.6E-8 |
| 10 | g16279.t1 | ProSiteProfiles | PS50097 | BTB domain profile. | 223 | 287 | 8.896 |
| 5 | g16279.t1 | SMART | SM00225 | BTB_4 | 223 | 316 | 2.7E-6 |
| 3 | g16279.t1 | SUPERFAMILY | SSF52058 | L domain-like | 42 | 154 | 2.08E-19 |
| 4 | g16279.t1 | SUPERFAMILY | SSF54695 | POZ domain | 219 | 316 | 1.06E-10 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
