General information for g16316.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16316 is located on chr_4: 9065484..9066437 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16316 | g16316.t2 | TTS | g16316.t2 | 9064470 | 9064470 |
| chr_4 | g16316 | g16316.t2 | isoform | g16316.t2 | 9065484 | 9066437 |
| chr_4 | g16316 | g16316.t2 | exon | g16316.t2.exon1 | 9065484 | 9066437 |
| chr_4 | g16316 | g16316.t2 | cds | g16316.t2.CDS1 | 9065486 | 9066094 |
| chr_4 | g16316 | g16316.t2 | TSS | g16316.t2 | 9066534 | 9066534 |
Sequences
>g16316.t2 Gene=g16316 Length=954
ATGAGAAAGCAAGAAAGATTAGAAAAGAAGAAACGAAAAACTGCAGCCTTAGTAAACATG
ATAAAAATTAACGAAATCGACAAAATTCATGAAAAAAATTCTGAAGTAAGTAAAAATTTG
AAAAAAATTTAAAAATTTCTAATAAAAAAATAATTTAAAGGAACCAGAAGCAAAAAAATC
AAAATTAAATCTCGATATTCAAATCTCAGATGATCAATACAAACTACTCAAAAAAGAACT
TGCAGAACGTCGCAATGCACTTCAAAATGCTCCGAAATTTCGTCTAAAATTCTTTGGTGA
AAAAGCAACTTTGTTGACAAATCCAACTAAAAGACAACCTTTGATGTTTGAAGATATTCA
ATATTTGTTAATGACATCACTTCTTGGCAGCAGTTCACCATTTAAACCAGATCGTTGGTG
TGTTCTTGAGAAAGCAAATCGAATAACTCACACTGTTGTGTTGGTCATTGAAGGATTAAC
AAGTTACAATTTTACAGCAAATGAAAGTCAATTTATACGCACAAAAGGAATTTTTGAACA
TCAACTTGAACTTGTGCTGCCGAAATATAAGAAAAATCGTTTAGTTGAGGAAATTTCAAA
TGTTCCATTGACTCAATCACATAAGGAAAGTTTAATCAAGCAATATGGAAGTCTTGAAGC
TGCATTAAAGCTCAACAAAGATCCAAATACGATGTTTTCAAAAAGTTTATTTCCAATTGA
TATTGACACTGATTCAGAAGAGCAAAAAATTGAATTAAATGAAAATGAAACTTTTCCTAG
AACTCGCTTGCTGTTGTCACCATTACAAATGATGATTGAAGGCTATCCAATACCAATTAA
AGGTGAATATGAAGAACGTTATCGTGGATATCGCTCAACAAAATCAATTTACAAACCAGT
CACATCAAAATCACCAATGTTTGGTTTAGATTGTGAAATGTGTCGTACAATTAA
>g16316.t2 Gene=g16316 Length=203
MFEDIQYLLMTSLLGSSSPFKPDRWCVLEKANRITHTVVLVIEGLTSYNFTANESQFIRT
KGIFEHQLELVLPKYKKNRLVEEISNVPLTQSHKESLIKQYGSLEAALKLNKDPNTMFSK
SLFPIDIDTDSEEQKIELNENETFPRTRLLLSPLQMMIEGYPIPIKGEYEERYRGYRSTK
SIYKPVTSKSPMFGLDCEMCRTI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
