General information for g1632.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Acyl-CoA desaturase.
Parent gene
- The parent gene g1632 is located on chr_3: 12235604..12236410 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1632 | g1632.t2 | isoform | g1632.t2 | 12234578 | 12235815 |
| chr_3 | g1632 | g1632.t2 | exon | g1632.t2.exon1 | 12234578 | 12234665 |
| chr_3 | g1632 | g1632.t2 | TSS | g1632.t2 | 12234582 | 12234582 |
| chr_3 | g1632 | g1632.t2 | exon | g1632.t2.exon2 | 12234931 | 12235071 |
| chr_3 | g1632 | g1632.t2 | exon | g1632.t2.exon3 | 12235135 | 12235265 |
| chr_3 | g1632 | g1632.t2 | cds | g1632.t2.CDS1 | 12235152 | 12235265 |
| chr_3 | g1632 | g1632.t2 | exon | g1632.t2.exon4 | 12235338 | 12235815 |
| chr_3 | g1632 | g1632.t2 | cds | g1632.t2.CDS2 | 12235338 | 12235577 |
| chr_3 | g1632 | g1632.t2 | TTS | g1632.t2 | 12236500 | 12236500 |
Sequences
>g1632.t2 Gene=g1632 Length=838
CAGTCATTCGGTTTTTAACTTCTGTGTAGAGAAGTTCAAGGAATTTTTTCAATAAAGAAA
TTTGAGTAGAAATTTTAAAAGAAAGTAAAAACTTCAAAACCAAGATCAGCTGATTACAAA
AGAGAAGCATCATGGCCCAGTGTACTTTTCTTCATTCATTTGAATATTTTAGGACTTTAT
GGAATCGTCATTTTATTCACTCATACAAAATTGATCACAATTTTATTCTCATTTATTTTG
ACAATTATGGGAATGTATGGAACGACAGTTGGTGCACACAGACTCTGGACTCATCAAACA
TTTAAAGCAAATACTTCACTTAGATTTATTCTTATGCTATGTCAAACTATGGCTGGTCAG
GGTTCAATTTATGATTTTGTTCGAACTCATCGTTTGCATCATCAAACTTTTAAAACTGCT
GATGATCCATTTTATAGTGACAAAGATTTTCTCTCAGCTCAAGTTTTTGCTCATATCAGA
AAATTAAGTACTAGACAAGAAAAATTACTTGAAACTGTGAATATGAAAGATATTGAAGAA
GATGGAATTGTCATGTTCCAAAAAAGGTTTTTAAAAAATATTTCAATTTTATTGACTTAA
AATTTTACAATTTTTTTTAGATTTTATTGGATTCTTTATTTGATTCTTTTTGTTCTGCTG
CCAATCAATGCACCATTAGAATATTGGGATGATACTGTGCAAGCTGCAATCTTTGTTGCT
TTTTCATTGAGATATTTAATTGTCATCAATTTCGCTTGGCTCGTTAATTCAGCTCATTTC
ATTTGGGCTTTGGATAAAAATCACAAACAATCTGACTCAAATATGGTCTTTATTGTCA
>g1632.t2 Gene=g1632 Length=117
MGMYGTTVGAHRLWTHQTFKANTSLRFILMLCQTMAGQGSIYDFVRTHRLHHQTFKTADD
PFYSDKDFLSAQVFAHIRKLSTRQEKLLETVNMKDIEEDGIVMFQKRFLKNISILLT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g1632.t2 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 2 | 116 | 0e+00 |
| 2 | g1632.t2 | PANTHER | PTHR11351:SF26 | AGAP003050-PA | 2 | 116 | 0e+00 |
| 4 | g1632.t2 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 11 | 31 | 1e-07 |
| 3 | g1632.t2 | PRINTS | PR00075 | Fatty acid desaturase family 1 signature | 48 | 77 | 1e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed