Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Acyl-CoA desaturase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1632 g1632.t6 isoform g1632.t6 12234578 12236410
chr_3 g1632 g1632.t6 exon g1632.t6.exon1 12234578 12234674
chr_3 g1632 g1632.t6 TSS g1632.t6 12234582 12234582
chr_3 g1632 g1632.t6 exon g1632.t6.exon2 12234931 12235071
chr_3 g1632 g1632.t6 exon g1632.t6.exon3 12235135 12235265
chr_3 g1632 g1632.t6 cds g1632.t6.CDS1 12235152 12235265
chr_3 g1632 g1632.t6 exon g1632.t6.exon4 12235338 12235543
chr_3 g1632 g1632.t6 cds g1632.t6.CDS2 12235338 12235543
chr_3 g1632 g1632.t6 exon g1632.t6.exon5 12235598 12235822
chr_3 g1632 g1632.t6 cds g1632.t6.CDS3 12235598 12235822
chr_3 g1632 g1632.t6 exon g1632.t6.exon6 12236134 12236410
chr_3 g1632 g1632.t6 cds g1632.t6.CDS4 12236134 12236410
chr_3 g1632 g1632.t6 TTS g1632.t6 12236500 12236500

Sequences

>g1632.t6 Gene=g1632 Length=1077
CAGTCATTCGGTTTTTAACTTCTGTGTAGAGAAGTTCAAGGAATTTTTTCAATAAAGAAA
TTTGAGTAGAAATTTTAAAAGAAAGTAAGTAAATTTTAAACTTCAAAACCAAGATCAGCT
GATTACAAAAGAGAAGCATCATGGCCCAGTGTACTTTTCTTCATTCATTTGAATATTTTA
GGACTTTATGGAATCGTCATTTTATTCACTCATACAAAATTGATCACAATTTTATTCTCA
TTTATTTTGACAATTATGGGAATGTATGGAACGACAGTTGGTGCACACAGACTCTGGACT
CATCAAACATTTAAAGCAAATACTTCACTTAGATTTATTCTTATGCTATGTCAAACTATG
GCTGGTCAGGGTTCAATTTATGATTTTGTTCGAACTCATCGTTTGCATCATCAAACTTTT
AAAACTGCTGATGATCCATTTTATAGTGACAAAGATTTTCTCTCAGCTCAAGTTTTTGCT
CATATCAGAAAATTAAGTACTAGACAAGAAAAATTACTTGAAACTGTGAATATGAAAGAT
ATTGAAGAAGATGGAATTGTCATGTTCCAAAAAAGATTTTATTGGATTCTTTATTTGATT
CTTTTTGTTCTGCTGCCAATCAATGCACCATTAGAATATTGGGATGATACTGTGCAAGCT
GCAATCTTTGTTGCTTTTTCATTGAGATATTTAATTGTCATCAATTTCGCTTGGCTCGTT
AATTCAGCTCATTTCATTTGGGCTTTGGATAAAAATCACAAACAATCTGACTCAAATATG
GTCTTTATTGTCACTAAAAGTTACTGGCCTCAATATCACTATTTAATTCCATACGACTAT
CAAACAGGAGAATTTGGCAATTATGGAGAAGGAACATCAACAAGTTTAATTAGAATTTTT
GCAGCAATGGGGTGGGCAACAGAGCTTAAAACAGTGACATCAGATGCAGTTAGAAAAGGA
CTCGCAATGGCTGTTGATACTGGAAGAGAAATTGTTGATTGCATAAAAGAGGCAAATGAT
GAAGAATTGCTAAAATTGCCACCTGATCATTATTTGAAAAGAGAAAATTTGAGTTAA

>g1632.t6 Gene=g1632 Length=273
MGMYGTTVGAHRLWTHQTFKANTSLRFILMLCQTMAGQGSIYDFVRTHRLHHQTFKTADD
PFYSDKDFLSAQVFAHIRKLSTRQEKLLETVNMKDIEEDGIVMFQKRFYWILYLILFVLL
PINAPLEYWDDTVQAAIFVAFSLRYLIVINFAWLVNSAHFIWALDKNHKQSDSNMVFIVT
KSYWPQYHYLIPYDYQTGEFGNYGEGTSTSLIRIFAAMGWATELKTVTSDAVRKGLAMAV
DTGREIVDCIKEANDEELLKLPPDHYLKRENLS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g1632.t6 CDD cd03505 Delta9-FADS-like 1 225 8.11339E-41
1 g1632.t6 PANTHER PTHR11351 ACYL-COA DESATURASE 2 261 4.6E-136
2 g1632.t6 PANTHER PTHR11351:SF26 AGAP003050-PA 2 261 4.6E-136
5 g1632.t6 PRINTS PR00075 Fatty acid desaturase family 1 signature 11 31 6.4E-14
4 g1632.t6 PRINTS PR00075 Fatty acid desaturase family 1 signature 48 77 6.4E-14
3 g1632.t6 PRINTS PR00075 Fatty acid desaturase family 1 signature 142 163 6.4E-14
8 g1632.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 107 -
11 g1632.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 108 126 -
10 g1632.t6 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 127 131 -
12 g1632.t6 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 132 155 -
9 g1632.t6 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 156 273 -
6 g1632.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 108 125 -
7 g1632.t6 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 135 157 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0055114 NA NA
GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed