General information for g16333.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Antizyme inhibitor 2.
Parent gene
- The parent gene g16333 is located on chr_4: 9108117..9109851 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16333 | g16333.t2 | isoform | g16333.t2 | 9108117 | 9109851 |
| chr_4 | g16333 | g16333.t2 | exon | g16333.t2.exon1 | 9108117 | 9108832 |
| chr_4 | g16333 | g16333.t2 | cds | g16333.t2.CDS1 | 9108705 | 9108832 |
| chr_4 | g16333 | g16333.t2 | exon | g16333.t2.exon2 | 9108887 | 9109146 |
| chr_4 | g16333 | g16333.t2 | cds | g16333.t2.CDS2 | 9108887 | 9109146 |
| chr_4 | g16333 | g16333.t2 | exon | g16333.t2.exon3 | 9109439 | 9109851 |
| chr_4 | g16333 | g16333.t2 | cds | g16333.t2.CDS3 | 9109439 | 9109851 |
| chr_4 | g16333 | g16333.t2 | TSS | g16333.t2 | NA | NA |
| chr_4 | g16333 | g16333.t2 | TTS | g16333.t2 | NA | NA |
Sequences
>g16333.t2 Gene=g16333 Length=1389
ATGAGTAAAATTTTTTATTATTTTTCTCACTTTCATTTAGAAAAATCCATTGAAAGATCA
TTGAAAGTTGAGAATGATTCGCATTATATTTGCAATTTGAGTGATCTTATTCGAAAATAT
GAAGATTGGAAAACTTATTTGCCACGAGTTAAACCATATTATGCAGTAAAATGCAATGAC
AATATTAACGTTCTCAAACTATTAGCATTTATTGGTTGCTCATTTGATTGTGCATCAGCA
GGCGAGATTGAGAAAATTTTATCATTAAACGTCGGTCCAGAACGAATTATTTTTGCAAAT
ACAACGAAATTTGCAAAGCATATCGAATTTGCAGAACGTCATAAAGTAAACCTCATGACA
TTTGATAATGAAGATGAACTTTATAAAATTTTGAAGATTTATCCAAACGCAAAATTAATC
TTGAGAATACGCTATGGCTCAGATAAGGCACTTTACAAATTGAGCGAAAAATTTGGATCT
TTACCAAATACGGAAGCACCTGAGCTGCTTAAATTAGCAAAAAGGTTAAAACTTAATGTT
GTTGGCATCAGTTTTCATATTGGTTCACGTTGTGAAGATTATAAAGTTTATTGCAGAGCA
ATTGCGATTTCCAGAGCTTTGTTTCAATTTGCTGCTGACATTGGCTTTAAGTTTAAAATT
CTTGATATTGGTGGTGGCTTTCCAGGAGATAATTTTAATCGAATCAAAGAATTTTCTATC
ATAATTAATGATGCATTGAATCGAAATTTTCCACTTGATGAGTTTCCTAATCTAGAAATT
GTATCTGAACCAGGAAGGTAACAAAATGTTTCTTTCCACGATTTAATCTAAATTCTTTTA
TTAAAAAAGGTATTTTGTTGAATCTGCTTTTACTCTTGTCACTCAAATTCACTCACGAAA
AATCACAAGAGATGCTAATGGGAAAATTGTTAGTGTCATGTATTATCTGAACGAAGGAAT
TTATTCAAATTTCCTTTTCATACCACTTGGACCTGAAAAAGTGACACCGAAAATTCTTTC
ACATAAACGTACGAATGAAAAATTTAAAACAACACTTTGGGGTCCAACACTTGATTCAAT
TGACAAAATCTGTCAAAACATTGAATTAGAATTGCTTGAAATTGATGATGTTATTTATTT
TATTAATATGGGAGCATACACAACTACTGTGGGCACAAACTTCAATAGTTTTTCAGCAAA
AACAAACATTGTTTACTTCCTGGAAAAAAATATTGAAAGGTGAGAGAAAAACTAAAATTT
TTATCCAATTTTCTCTTTACAAATCAATAACTTTGAAATATTTTTAATTAATAATAATTA
ATTGCTTTAATTTACAGCAACAAATTAAACACTGAACTATTTGATTTTAACTTCATCAAC
GACACATGA
>g16333.t2 Gene=g16333 Length=266
MSKIFYYFSHFHLEKSIERSLKVENDSHYICNLSDLIRKYEDWKTYLPRVKPYYAVKCND
NINVLKLLAFIGCSFDCASAGEIEKILSLNVGPERIIFANTTKFAKHIEFAERHKVNLMT
FDNEDELYKILKIYPNAKLILRIRYGSDKALYKLSEKFGSLPNTEAPELLKLAKRLKLNV
VGISFHIGSRCEDYKVYCRAIAISRALFQFAADIGFKFKILDIGGGFPGDNFNRIKEFSI
IINDALNRNFPLDEFPNLEIVSEPGR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 14 | g16333.t2 | Gene3D | G3DSA:3.20.20.10 | Alanine racemase | 34 | 266 | 1.7E-74 |
| 2 | g16333.t2 | PANTHER | PTHR11482 | ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE | 22 | 266 | 3.6E-93 |
| 3 | g16333.t2 | PANTHER | PTHR11482:SF6 | ORNITHINE DECARBOXYLASE 1-RELATED | 22 | 266 | 3.6E-93 |
| 4 | g16333.t2 | PRINTS | PR01182 | Ornithine decarboxylase signature | 26 | 50 | 7.7E-33 |
| 7 | g16333.t2 | PRINTS | PR01182 | Ornithine decarboxylase signature | 52 | 79 | 7.7E-33 |
| 8 | g16333.t2 | PRINTS | PR01179 | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 54 | 72 | 2.9E-20 |
| 11 | g16333.t2 | PRINTS | PR01179 | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 74 | 86 | 2.9E-20 |
| 5 | g16333.t2 | PRINTS | PR01182 | Ornithine decarboxylase signature | 96 | 120 | 7.7E-33 |
| 6 | g16333.t2 | PRINTS | PR01182 | Ornithine decarboxylase signature | 126 | 148 | 7.7E-33 |
| 10 | g16333.t2 | PRINTS | PR01179 | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 177 | 190 | 2.9E-20 |
| 9 | g16333.t2 | PRINTS | PR01179 | Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature | 260 | 266 | 2.9E-20 |
| 1 | g16333.t2 | Pfam | PF02784 | Pyridoxal-dependent decarboxylase, pyridoxal binding domain | 34 | 266 | 1.5E-68 |
| 13 | g16333.t2 | ProSitePatterns | PS00878 | Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. | 54 | 72 | - |
| 12 | g16333.t2 | SUPERFAMILY | SSF51419 | PLP-binding barrel | 28 | 266 | 9.81E-60 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
| GO:0006596 | polyamine biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed