General information for g16337.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable peroxisomal acyl-coenzyme A oxidase 1.
Parent gene
- The parent gene g16337 is located on chr_4: 9127850..9129399 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16337 | g16337.t3 | TSS | g16337.t3 | 9126572 | 9126572 |
| chr_4 | g16337 | g16337.t3 | isoform | g16337.t3 | 9126671 | 9127850 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon1 | 9126671 | 9126800 |
| chr_4 | g16337 | g16337.t3 | cds | g16337.t3.CDS1 | 9126671 | 9126800 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon2 | 9126865 | 9127024 |
| chr_4 | g16337 | g16337.t3 | cds | g16337.t3.CDS2 | 9126865 | 9127024 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon3 | 9127082 | 9127143 |
| chr_4 | g16337 | g16337.t3 | cds | g16337.t3.CDS3 | 9127082 | 9127143 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon4 | 9127205 | 9127425 |
| chr_4 | g16337 | g16337.t3 | cds | g16337.t3.CDS4 | 9127205 | 9127425 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon5 | 9127491 | 9127664 |
| chr_4 | g16337 | g16337.t3 | cds | g16337.t3.CDS5 | 9127491 | 9127559 |
| chr_4 | g16337 | g16337.t3 | exon | g16337.t3.exon6 | 9127724 | 9127850 |
| chr_4 | g16337 | g16337.t3 | TTS | g16337.t3 | NA | NA |
Sequences
>g16337.t3 Gene=g16337 Length=874
ATGCCTGCCATATCGAAAACTATTAACAAAGATTTAAAAGAAGAGCGAGATAAAGTAAAA
TTCAATATTGAAGAATTTACAAACTGGTTCTATGGTGGTTCAGAGAAAGTGTTAGAGAAA
AGAAAAATTGAAAATTACTTCTTATCTGATAAGTCTTTAAATTTGGAAACTGATACGAGT
TATCTTAGCTACAAAGAAAAGTATGAAGAAGCAATTAGAAGAAGTTGTATTGTTTACCCT
AAAATGTTAAAGCTTCATCAAGAGCTTGGTGGAACTGAAGAAGATTTTCGTAAAATCATG
GACAATTTGAGATATACAATGAGTGCAATTCAAAAAGAAGGAAATCCGTTTATGTTGCAT
TTTGGTATGTTTACGGTAACTATAATGAATTTGGCTAATGATGAGCAGCTGTCAGAATGG
CTTCCGAAATGCGTTAATTGTGAAATACTTGGAACTTATGCACAGACTGAACTAGGACAT
GGTACATTTATCAAAAAACTTGAGACAACTGCTACTTATGATCCAAAAACAAAAGAATTT
GTCCTTAACACACCAACTTTAACAGCATACAAACAAGTGGTGGCCAGGAAATTTAGGTCA
TACAGTCAACCATGCAATAGTAATGGCACAACTATATACTAAGGGAGAGTGCTGTGGAAT
TCAACCATTCATCGTACAAATTAGAGACTTAGAAACCCATAAGCCAATGCCAGGAATCAC
AGTTGGTGATATTGGAAATAAAGTTGGATTTCAGACTGTTAATAACGGCTTTTTGGCATT
TAATAATGTTCGTATTCCATACAAAAACATGCTCATGAAAAGCTCAAAGTTATCAGAAGA
CGGAACTTTCATAAAACCGAAAAATGCCAAACAA
>g16337.t3 Gene=g16337 Length=213
MPAISKTINKDLKEERDKVKFNIEEFTNWFYGGSEKVLEKRKIENYFLSDKSLNLETDTS
YLSYKEKYEEAIRRSCIVYPKMLKLHQELGGTEEDFRKIMDNLRYTMSAIQKEGNPFMLH
FGMFTVTIMNLANDEQLSEWLPKCVNCEILGTYAQTELGHGTFIKKLETTATYDPKTKEF
VLNTPTLTAYKQVVARKFRSYSQPCNSNGTTIY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16337.t3 | Gene3D | G3DSA:1.10.540.10 | - | 22 | 150 | 0 |
| 6 | g16337.t3 | Gene3D | G3DSA:2.40.110.10 | - | 151 | 202 | 0 |
| 2 | g16337.t3 | PANTHER | PTHR10909:SF250 | ACYL-COENZYME A OXIDASE | 9 | 191 | 0 |
| 3 | g16337.t3 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 9 | 191 | 0 |
| 1 | g16337.t3 | Pfam | PF14749 | Acyl-coenzyme A oxidase N-terminal | 22 | 150 | 0 |
| 4 | g16337.t3 | SUPERFAMILY | SSF56645 | Acyl-CoA dehydrogenase NM domain-like | 10 | 193 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed