Gene loci information

Transcript annotation

  • This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16337 g16337.t5 TSS g16337.t5 9126572 9126572
chr_4 g16337 g16337.t5 isoform g16337.t5 9126671 9128259
chr_4 g16337 g16337.t5 exon g16337.t5.exon1 9126671 9126800
chr_4 g16337 g16337.t5 cds g16337.t5.CDS1 9126671 9126800
chr_4 g16337 g16337.t5 exon g16337.t5.exon2 9126865 9127024
chr_4 g16337 g16337.t5 cds g16337.t5.CDS2 9126865 9127024
chr_4 g16337 g16337.t5 exon g16337.t5.exon3 9127082 9127143
chr_4 g16337 g16337.t5 cds g16337.t5.CDS3 9127082 9127143
chr_4 g16337 g16337.t5 exon g16337.t5.exon4 9127205 9127425
chr_4 g16337 g16337.t5 cds g16337.t5.CDS4 9127205 9127425
chr_4 g16337 g16337.t5 exon g16337.t5.exon5 9127495 9127664
chr_4 g16337 g16337.t5 cds g16337.t5.CDS5 9127495 9127664
chr_4 g16337 g16337.t5 exon g16337.t5.exon6 9127724 9128259
chr_4 g16337 g16337.t5 cds g16337.t5.CDS6 9127724 9128258
chr_4 g16337 g16337.t5 TTS g16337.t5 NA NA

Sequences

>g16337.t5 Gene=g16337 Length=1279
ATGCCTGCCATATCGAAAACTATTAACAAAGATTTAAAAGAAGAGCGAGATAAAGTAAAA
TTCAATATTGAAGAATTTACAAACTGGTTCTATGGTGGTTCAGAGAAAGTGTTAGAGAAA
AGAAAAATTGAAAATTACTTCTTATCTGATAAGTCTTTAAATTTGGAAACTGATACGAGT
TATCTTAGCTACAAAGAAAAGTATGAAGAAGCAATTAGAAGAAGTTGTATTGTTTACCCT
AAAATGTTAAAGCTTCATCAAGAGCTTGGTGGAACTGAAGAAGATTTTCGTAAAATCATG
GACAATTTGAGATATACAATGAGTGCAATTCAAAAAGAAGGAAATCCGTTTATGTTGCAT
TTTGGTATGTTTACGGTAACTATAATGAATTTGGCTAATGATGAGCAGCTGTCAGAATGG
CTTCCGAAATGCGTTAATTGTGAAATACTTGGAACTTATGCACAGACTGAACTAGGACAT
GGTACATTTATCAAAAAACTTGAGACAACTGCTACTTATGATCCAAAAACAAAAGAATTT
GTCCTTAACACACCAACTTTAACAGCATACAAATGGTGGCCAGGAAATTTAGGTCATACA
GTCAACCATGCAATAGTAATGGCACAACTATATACTAAGGGAGAGTGCTGTGGAATTCAA
CCATTCATCGTACAAATTAGAGACTTAGAAACCCATAAGCCAATGCCAGGAATCACAGTT
GGTGATATTGGAAATAAAGTTGGATTTCAGACTGTTAATAACGGCTTTTTGGCATTTAAT
AATGTTCGTATTCCATACAAAAACATGCTCATGAAAAGCTCAAAGTTATCAGAAGACGGA
ACTTTCATAAAACCGAAAAATGCCAAACAAAATTATGGTACAATGGTATTTGTACGTGTT
TATATGATAATGGATGTTGTTGTAAATATGTCACGTGCTGCAACAATTGCAACTCGCTAT
TCAATGGTCAGAAGACAAAGTCCAATAAACCCAAATGATGAAGTGGAACCAAAAATTATT
GAACACATGACACAACAATATAAAATTTTCCCAGCTATTGCTAAAGTTATTATCTATAAG
TGCATGGCAGATAATTTGAGAAATCTTTATCAACAGATAACATTAGAAGGAACAAAAGGC
AGTTTTGAACGTGCACCAGAATTACATGCACTTTCATGCTGTTTAAAAGCTGTTTGCACT
AACGATGCAGCGAAGACAACTGAGATTCTTAGGCTCGCATGCGGAGGACATGGTTTCCTT
AATTCTTCAGGTTTTGCAG

>g16337.t5 Gene=g16337 Length=426
MPAISKTINKDLKEERDKVKFNIEEFTNWFYGGSEKVLEKRKIENYFLSDKSLNLETDTS
YLSYKEKYEEAIRRSCIVYPKMLKLHQELGGTEEDFRKIMDNLRYTMSAIQKEGNPFMLH
FGMFTVTIMNLANDEQLSEWLPKCVNCEILGTYAQTELGHGTFIKKLETTATYDPKTKEF
VLNTPTLTAYKWWPGNLGHTVNHAIVMAQLYTKGECCGIQPFIVQIRDLETHKPMPGITV
GDIGNKVGFQTVNNGFLAFNNVRIPYKNMLMKSSKLSEDGTFIKPKNAKQNYGTMVFVRV
YMIMDVVVNMSRAATIATRYSMVRRQSPINPNDEVEPKIIEHMTQQYKIFPAIAKVIIYK
CMADNLRNLYQQITLEGTKGSFERAPELHALSCCLKAVCTNDAAKTTEILRLACGGHGFL
NSSGFA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16337.t5 Gene3D G3DSA:1.10.540.10 - 22 150 0
8 g16337.t5 Gene3D G3DSA:2.40.110.10 - 151 289 0
9 g16337.t5 Gene3D G3DSA:1.20.140.10 - 290 426 0
3 g16337.t5 PANTHER PTHR10909:SF250 ACYL-COENZYME A OXIDASE 9 425 0
4 g16337.t5 PANTHER PTHR10909 ELECTRON TRANSPORT OXIDOREDUCTASE 9 425 0
1 g16337.t5 Pfam PF14749 Acyl-coenzyme A oxidase N-terminal 22 150 0
2 g16337.t5 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 153 262 0
5 g16337.t5 SUPERFAMILY SSF56645 Acyl-CoA dehydrogenase NM domain-like 11 273 0
6 g16337.t5 SUPERFAMILY SSF47203 Acyl-CoA dehydrogenase C-terminal domain-like 290 425 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed