General information for g16337.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable peroxisomal acyl-coenzyme A oxidase 1.
Parent gene
- The parent gene g16337 is located on chr_4: 9127850..9129399 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16337 | g16337.t9 | isoform | g16337.t9 | 9127850 | 9129399 |
| chr_4 | g16337 | g16337.t9 | exon | g16337.t9.exon1 | 9127850 | 9128259 |
| chr_4 | g16337 | g16337.t9 | cds | g16337.t9.CDS1 | 9127863 | 9128259 |
| chr_4 | g16337 | g16337.t9 | exon | g16337.t9.exon2 | 9128534 | 9128572 |
| chr_4 | g16337 | g16337.t9 | cds | g16337.t9.CDS2 | 9128534 | 9128572 |
| chr_4 | g16337 | g16337.t9 | exon | g16337.t9.exon3 | 9128636 | 9129081 |
| chr_4 | g16337 | g16337.t9 | cds | g16337.t9.CDS3 | 9128636 | 9129081 |
| chr_4 | g16337 | g16337.t9 | exon | g16337.t9.exon4 | 9129139 | 9129399 |
| chr_4 | g16337 | g16337.t9 | cds | g16337.t9.CDS4 | 9129139 | 9129399 |
| chr_4 | g16337 | g16337.t9 | TTS | g16337.t9 | 9129481 | 9129481 |
| chr_4 | g16337 | g16337.t9 | TSS | g16337.t9 | NA | NA |
Sequences
>g16337.t9 Gene=g16337 Length=1156
AAATTATGGTACAATGGTATTTGTACGTGTTTATATGATAATGGATGTTGTTGTAAATAT
GTCACGTGCTGCAACAATTGCAACTCGCTATTCAATGGTCAGAAGACAAAGTCCAATAAA
CCCAAATGATGAAGTGGAACCAAAAATTATTGAACACATGACACAACAATATAAAATTTT
CCCAGCTATTGCTAAAGTTATTATCTATAAGTGCATGGCAGATAATTTGAGAAATCTTTA
TCAACAGATAACATTAGAAGGAACAAAAGGCAGTTTTGAACGTGCACCAGAATTACATGC
ACTTTCATGCTGTTTAAAAGCTGTTTGCACTAACGATGCAGCGAAGACAACTGAGATTCT
TAGGCTCGCATGCGGAGGACATGGTTTCCTTAATTCTTCAGGTTTTGCAGATAATTATAA
AAATGCAACGGCAGCCCAAACATATGAAGGTGAAAATACAGTAATGTTGCTCCAAACTGC
AAGGTTTCTAATTAAATCATTCACAAAAGCAAAAAATGGTGAGAAATTAACTGAAGGAGT
TTTTTATTTGAATGATTTTGTAAAGCGCAATGGCAAACGTGAACCTTTTGATGATTCAAT
TCGTGGAATTTTGAGAGCAATACAAGCAGCAGCTGCTGGTAAAATTTCTTCTGCATGGAA
ACATATTGAAGAAAAGAAGAAATTTCTTACAGTTGAAGAAGCGACTAATCAAACTGGAAT
TGAATTGATTAGATGCGCTGAGTTGCATTGTTATGTATGCTTACTTCAAACAGGAATTGA
AGAAATTGAACAAATTATTAAAAATGTATCACCAGCACTTAGAGAAGTTTTTAAAAATGT
TCTTGAACTTTATGCCATCGATAATGTTCTTAATATGATTGGAGATATATTGCAACATGT
TGATATGACAAATGCTGATATTGATAAACTACAAAAGCGTTTAGAAGCTGTTCTTACATT
TTTTAGATCATCAGCAATTGGTATTGTAGACGGTTTTGATTTATCTGATGCTGTTGTTTC
ATCGACTCTTGGCACATATGATGGAAATGTATATGAAAATATATTTGAGGCAGCAATGAA
ATCACCATTGAATCAAGAAGACGTCAACAAATCATTCCATCTATATCTCAAACCGTTCCT
TAAATCAAATTTGTAA
>g16337.t9 Gene=g16337 Length=380
MVFVRVYMIMDVVVNMSRAATIATRYSMVRRQSPINPNDEVEPKIIEHMTQQYKIFPAIA
KVIIYKCMADNLRNLYQQITLEGTKGSFERAPELHALSCCLKAVCTNDAAKTTEILRLAC
GGHGFLNSSGFADNYKNATAAQTYEGENTVMLLQTARFLIKSFTKAKNGEKLTEGVFYLN
DFVKRNGKREPFDDSIRGILRAIQAAAAGKISSAWKHIEEKKKFLTVEEATNQTGIELIR
CAELHCYVCLLQTGIEEIEQIIKNVSPALREVFKNVLELYAIDNVLNMIGDILQHVDMTN
ADIDKLQKRLEAVLTFFRSSAIGIVDGFDLSDAVVSSTLGTYDGNVYENIFEAAMKSPLN
QEDVNKSFHLYLKPFLKSNL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16337.t9 | Gene3D | G3DSA:1.20.140.10 | - | 1 | 170 | 1.6E-52 |
| 8 | g16337.t9 | Gene3D | G3DSA:1.20.140.10 | - | 195 | 329 | 6.5E-29 |
| 2 | g16337.t9 | PANTHER | PTHR10909:SF250 | ACYL-COENZYME A OXIDASE | 1 | 379 | 5.9E-96 |
| 3 | g16337.t9 | PANTHER | PTHR10909 | ELECTRON TRANSPORT OXIDOREDUCTASE | 1 | 379 | 5.9E-96 |
| 1 | g16337.t9 | Pfam | PF01756 | Acyl-CoA oxidase | 198 | 377 | 9.8E-46 |
| 5 | g16337.t9 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 1 | 181 | 7.96E-47 |
| 4 | g16337.t9 | SUPERFAMILY | SSF47203 | Acyl-CoA dehydrogenase C-terminal domain-like | 199 | 378 | 2.72E-39 |
| 6 | g16337.t9 | SignalP_GRAM_POSITIVE | SignalP-TM | SignalP-TM | 1 | 19 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | MF |
| GO:0006635 | fatty acid beta-oxidation | BP |
| GO:0003997 | acyl-CoA oxidase activity | MF |
| GO:0005777 | peroxisome | CC |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
