Gene loci information

Transcript annotation

  • This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1634 g1634.t1 TTS g1634.t1 12240685 12240685
chr_3 g1634 g1634.t1 isoform g1634.t1 12241063 12247846
chr_3 g1634 g1634.t1 exon g1634.t1.exon1 12241063 12241256
chr_3 g1634 g1634.t1 cds g1634.t1.CDS1 12241063 12241256
chr_3 g1634 g1634.t1 exon g1634.t1.exon2 12241313 12241595
chr_3 g1634 g1634.t1 cds g1634.t1.CDS2 12241313 12241595
chr_3 g1634 g1634.t1 exon g1634.t1.exon3 12242799 12242828
chr_3 g1634 g1634.t1 cds g1634.t1.CDS3 12242799 12242828
chr_3 g1634 g1634.t1 exon g1634.t1.exon4 12242885 12243465
chr_3 g1634 g1634.t1 cds g1634.t1.CDS4 12242885 12243465
chr_3 g1634 g1634.t1 exon g1634.t1.exon5 12243526 12244152
chr_3 g1634 g1634.t1 cds g1634.t1.CDS5 12243526 12244152
chr_3 g1634 g1634.t1 exon g1634.t1.exon6 12244332 12244360
chr_3 g1634 g1634.t1 cds g1634.t1.CDS6 12244332 12244360
chr_3 g1634 g1634.t1 exon g1634.t1.exon7 12247761 12247846
chr_3 g1634 g1634.t1 cds g1634.t1.CDS7 12247761 12247846
chr_3 g1634 g1634.t1 TSS g1634.t1 12248387 12248387

Sequences

>g1634.t1 Gene=g1634 Length=1830
ATGAGCAAAAATTTTGATACCAACATAGCGAAAACACTTGATCAAACAACGATAAGAAAT
GTGGAGAGTGTGGTACCAAAAAAGAGACAAGAACTTTTAAAGTGGTATGGATGGGGTTAT
GAAGATTCAAAGTTTCACATCGATGATTATAGTCTTTTCTTCTCTGGCTCACGCTATCCA
ATTGGAAATGATGTTGAGCTACCAAATTTTCGTGATTGGATGGGACAAAAATTCGAGCTT
TCAGTTCTCGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAATGAAACA
TTTTACAATACGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGATCGGTTT
ATTCGCTGTCATGGTCAAACTCTCCACGACATTTATAACATAAGAGCTAACAAATTTAAA
CGCATTCCCGATTTAATTCTTTGGCCAAAATGTCATGATGATGTTGTCAAAATTGTAAAG
TTAGCCGACGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGTTAGTGGT
TCTATCACTTGTCCGCAAGACGAAGAACGCTCAATTGTCGTCATTGATACTTCACAAATG
AATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTCGAAAGTGGTATTATT
GGACAGGATTTAGAAAGAACACTAAAAGATGAAGGCTTAACAATGGGACATGAACCAGAT
AGTATTGAATTTTCTACTCTTGGTGGATGGATTGCAACTAGAGCATCGGGCATGAAAAAG
AATGTCTATGGCAATATTGAAGACATTGTTATACGAGTGAAAATGGTGACATGTAAAGGT
GTACTTGAACGGAATATTTCAGCTCCTCGTGTGAGTTGTGGACCTGATTTCAATCAATTA
ATACTTGGTAGTGAAGGAACACTTGGTATTGTCACTGAAGTTATAGTCAAAGTTCGACCT
TTGCCTGCTGTTAAAAAGTATGGCTCGCTTGTATTTCCTAACTTTGAAATGGGAGTTAGT
TGTCTACGTGAGATTGCCAAGAGGCGATGTCAACCAGCTTCAATAAGATTAATGGACAAT
GAACAATTTCATTTTGGACAATCACTTAAAGCCGATAATGGATTATTTTCAAAATTTATC
GATAGTTTAAAAATGTTTTTGTTGAGTAAAGTCAAAGGATATGATTTGATGAAAATTTCT
GTTGCAACATTGCTCTTTGAAGGAGATAAAGAAGAAGTTGAGAAACAGGAAAAATTAATT
TACGAAATTGCTGATCGATATTCTGGTTTAAAAGCTGGTGAAACAAATGGACAAAAAGGA
TATGTCTTGACTTACGTCATTGCGTACATTCGGGATCTTGGTCTTAATCATGGTATAATT
TCTGAGTCATTTGAAACTTCAGTGCCATGGGATAAATGCTTATCTTTGTGTATTAATGTG
AAGGCATGTATAGAATCGGAATGTAAAAAACGCGGAATTATTTACTACTTAGTCTGCTAT
CGTGTGACGCAAACTTATGATGCGGGTGCATGTGTCTATTTCTACTTTGGTTTTCGATGG
GATTCTGATTGTTCTGATCCTGTTGGCCAGTATGAAGAAATTGAAAATAAAGCAAGGGAC
GAAATTTTAGCTTCAGGTGGTAGCATAAGTCATCATCATGGGATCGGAAAAATACGTGCT
AAATGGTACAAGCAAAGTGTTTCACCTATTGGCGTAAACCTTTACAAGTCAGCAAAACTT
GAACTTGATCCTAAAAATATATTTGGCCTCAATAATTTACTTACTGAAGAAGATCAAATT
AATTTTGAAACATTAAATTCTAAATTATGA

>g1634.t1 Gene=g1634 Length=609
MSKNFDTNIAKTLDQTTIRNVESVVPKKRQELLKWYGWGYEDSKFHIDDYSLFFSGSRYP
IGNDVELPNFRDWMGQKFELSVLEKPKLPTTFPEPILNETFYNTIKDMKMDYSVDGEDRF
IRCHGQTLHDIYNIRANKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSG
SITCPQDEERSIVVIDTSQMNRLLWLDKENLVACFESGIIGQDLERTLKDEGLTMGHEPD
SIEFSTLGGWIATRASGMKKNVYGNIEDIVIRVKMVTCKGVLERNISAPRVSCGPDFNQL
ILGSEGTLGIVTEVIVKVRPLPAVKKYGSLVFPNFEMGVSCLREIAKRRCQPASIRLMDN
EQFHFGQSLKADNGLFSKFIDSLKMFLLSKVKGYDLMKISVATLLFEGDKEEVEKQEKLI
YEIADRYSGLKAGETNGQKGYVLTYVIAYIRDLGLNHGIISESFETSVPWDKCLSLCINV
KACIESECKKRGIIYYLVCYRVTQTYDAGACVYFYFGFRWDSDCSDPVGQYEEIENKARD
EILASGGSISHHHGIGKIRAKWYKQSVSPIGVNLYKSAKLELDPKNIFGLNNLLTEEDQI
NFETLNSKL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g1634.t1 Gene3D G3DSA:3.30.43.10 - 33 200 0.000
10 g1634.t1 Gene3D G3DSA:3.30.160.650 - 42 82 0.000
7 g1634.t1 Gene3D G3DSA:3.30.465.10 - 201 321 0.000
6 g1634.t1 Gene3D G3DSA:3.30.70.3450 - 322 445 0.000
8 g1634.t1 Gene3D G3DSA:3.30.300.330 - 446 553 0.000
11 g1634.t1 Gene3D G3DSA:1.10.45.10 - 554 594 0.000
3 g1634.t1 PANTHER PTHR46568 ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL 10 594 0.000
1 g1634.t1 Pfam PF01565 FAD binding domain 143 282 0.000
2 g1634.t1 Pfam PF02913 FAD linked oxidases, C-terminal domain 321 588 0.000
12 g1634.t1 ProSiteProfiles PS51387 PCMH-type FAD-binding domain profile. 139 321 24.925
5 g1634.t1 SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like 112 322 0.000
4 g1634.t1 SUPERFAMILY SSF55103 FAD-linked oxidases, C-terminal domain 325 592 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008609 alkylglycerone-phosphate synthase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0003824 catalytic activity MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed