General information for g16344.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Pickpocket protein 28.
Parent gene
- The parent gene g16344 is located on chr_4: 9146144..9148030 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16344 | g16344.t1 | isoform | g16344.t1 | 9146144 | 9148030 |
| chr_4 | g16344 | g16344.t1 | exon | g16344.t1.exon1 | 9146144 | 9146306 |
| chr_4 | g16344 | g16344.t1 | cds | g16344.t1.CDS1 | 9146144 | 9146306 |
| chr_4 | g16344 | g16344.t1 | exon | g16344.t1.exon2 | 9146355 | 9146526 |
| chr_4 | g16344 | g16344.t1 | cds | g16344.t1.CDS2 | 9146355 | 9146526 |
| chr_4 | g16344 | g16344.t1 | exon | g16344.t1.exon3 | 9146584 | 9146669 |
| chr_4 | g16344 | g16344.t1 | cds | g16344.t1.CDS3 | 9146584 | 9146669 |
| chr_4 | g16344 | g16344.t1 | exon | g16344.t1.exon4 | 9146724 | 9148030 |
| chr_4 | g16344 | g16344.t1 | cds | g16344.t1.CDS4 | 9146724 | 9148030 |
| chr_4 | g16344 | g16344.t1 | TSS | g16344.t1 | NA | NA |
| chr_4 | g16344 | g16344.t1 | TTS | g16344.t1 | NA | NA |
Sequences
>g16344.t1 Gene=g16344 Length=1728
ATGTTTCAAACAATTTGTGAAACTTTTCAAAATTTTGGTGTTGACACTTCAATTCATGGT
GTAACTTTTATAACTGGAAGAAATAGAAATTTTTTTAACAGAATTATTTGGTCGATTGCA
CTTTTGTTTTCTTCATCATTTTTAATTTACAACATTTATTTTTCGTACAATAAATGGCAA
AATGCACCACCAATTGTCATAAGAAATAATGTTAGAAATTTAAAAGAAATTCCAATGCCT
GCATTGACAATTTGTTCACCATTGTTTGTTAAGGAAAATTTAACTTCTTATTGGGAAATT
TTGGAAATATTCTATAAAAATCGATCATCGTCTTTAACTACAAATGATTTAAAACCTTTT
GTAGCAAAATTGCATGCTTGTGATTATATTGATAAAACAGTTCTTGAAAACTTACCAAAT
TTAACAGATATAAATATTGTGCAATTACTCAATCAAAGCTCATATAAACCTACAGATTTT
TCACTTTATTGCATTTACAATGATTCAAATTTAGATTGTTCTAAAACATTCAATAAAATT
TTGACCAATGAAGGTTTTTGTTATTCATTAAATATGCAAGATTTTGATGTTATTTTTAAT
GCTGAAAAAATCAGTGAAGATTTTTATTCTTACAAAAATAATTTAAAGAAAACAAATAAA
CTTTACAATTCCAAAAAAAATTTCTTCAAAAATGAAAAAGAAAAAGTTCAATGGACACTT
GAAAAAGGTTATATAAAAATTCCACATGAAAATTCAATTCCAATGACAGCTTTTAGGAAT
AGAAAAGAAGGAACTTTATTGCATTTTCAAAAAATTAATAAAAATAATTCATGCGATAAA
AAAAATTTATATTTTCGATATTATTTACATTTGCCTAATGAAATACCATCACCTTTGCAT
CACAAAAATGTTTTAAAATTTAACATTGCTGAAACAATAACATTGAAGGCTAAAATGTAT
AAAACAGATGAAAGCTTAAGAAAATATTCACCTGAAATTCGTGGTTGTTATTTTGAGGGT
GAAAAAAATTTGAAATTTTTCAAGTCTTACACAAAAGCAAATTGTGAATTTGAATGCATG
GCAAATCAAACTTTTGAAACTTGTGGATGTGTAAAATTTTCAATGCCAAGGGATAATGAA
ACAAAAGTCTGCGATGAGACAAAAATCAAATGCTACACGGATGTAATGACATTTTTTCGA
AATAATCAAGAAAAAGCTCAACCTTGTGATTGCTTGAGAACTTGTAGTGACATCAAATAT
TCAACTACATACTCAGATATTTCATCTTTTGAAAATAATAATGACACTTACGCGTTAGCA
CATCTATTTTTCCGTTTTGAAGAATATTTCATTGAAGAAGAAGAAATTTATACACCTTAC
ACTATACTTATATTTATAGCAGAAACTGGTGGTCTAATGGGACTTTTTCTTGGTTGTTCA
ATTTTATCAATCATGGAAATTTTTTATTTTTTTATTTTACTTTTTGTCAAAGTTTTTACA
ATTTTTATTTTTTCATACTTTAAAAAGAATCAAATTCAAAATCAAGAAAATGTCATACAA
ATCAGACCAAAATCAGTTTACAATCAACAAAATACAAATCAAGAAAAGATTGGAAAATTA
GAAAAAGAAATTCAAGTCATTAATCAAAAACTTACAATCATAATACAAATGACAAATGAA
AATAAAGAAAAACTAGAAAAATTACAAAGCGATAATTTTTTGTTATAA
>g16344.t1 Gene=g16344 Length=575
MFQTICETFQNFGVDTSIHGVTFITGRNRNFFNRIIWSIALLFSSSFLIYNIYFSYNKWQ
NAPPIVIRNNVRNLKEIPMPALTICSPLFVKENLTSYWEILEIFYKNRSSSLTTNDLKPF
VAKLHACDYIDKTVLENLPNLTDINIVQLLNQSSYKPTDFSLYCIYNDSNLDCSKTFNKI
LTNEGFCYSLNMQDFDVIFNAEKISEDFYSYKNNLKKTNKLYNSKKNFFKNEKEKVQWTL
EKGYIKIPHENSIPMTAFRNRKEGTLLHFQKINKNNSCDKKNLYFRYYLHLPNEIPSPLH
HKNVLKFNIAETITLKAKMYKTDESLRKYSPEIRGCYFEGEKNLKFFKSYTKANCEFECM
ANQTFETCGCVKFSMPRDNETKVCDETKIKCYTDVMTFFRNNQEKAQPCDCLRTCSDIKY
STTYSDISSFENNNDTYALAHLFFRFEEYFIEEEEIYTPYTILIFIAETGGLMGLFLGCS
ILSIMEIFYFFILLFVKVFTIFIFSYFKKNQIQNQENVIQIRPKSVYNQQNTNQEKIGKL
EKEIQVINQKLTIIIQMTNENKEKLEKLQSDNFLL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g16344.t1 | Coils | Coil | Coil | 548 | 568 | - |
| 6 | g16344.t1 | Gene3D | G3DSA:1.10.287.820 | - | 334 | 415 | 4.6E-9 |
| 7 | g16344.t1 | Gene3D | G3DSA:1.10.287.770 | - | 438 | 498 | 7.3E-8 |
| 2 | g16344.t1 | PANTHER | PTHR11690:SF222 | ACID-SENSING ION CHANNEL 5 | 8 | 519 | 8.3E-48 |
| 3 | g16344.t1 | PANTHER | PTHR11690 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED | 8 | 519 | 8.3E-48 |
| 1 | g16344.t1 | Pfam | PF00858 | Amiloride-sensitive sodium channel | 15 | 490 | 2.1E-65 |
| 10 | g16344.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 34 | - |
| 13 | g16344.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 56 | - |
| 11 | g16344.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 57 | 459 | - |
| 14 | g16344.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 460 | 480 | - |
| 9 | g16344.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 481 | 486 | - |
| 15 | g16344.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 487 | 507 | - |
| 12 | g16344.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 508 | 575 | - |
| 5 | g16344.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 57 | - |
| 4 | g16344.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 485 | 507 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016020 | membrane | CC |
| GO:0005272 | sodium channel activity | MF |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed