General information for g1635.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1635 is located on chr_3: 12252561..12253310 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1635 | g1635.t4 | isoform | g1635.t4 | 12250312 | 12253310 |
| chr_3 | g1635 | g1635.t4 | exon | g1635.t4.exon1 | 12250312 | 12250892 |
| chr_3 | g1635 | g1635.t4 | cds | g1635.t4.CDS1 | 12250312 | 12250892 |
| chr_3 | g1635 | g1635.t4 | exon | g1635.t4.exon2 | 12250953 | 12251579 |
| chr_3 | g1635 | g1635.t4 | cds | g1635.t4.CDS2 | 12250953 | 12251579 |
| chr_3 | g1635 | g1635.t4 | exon | g1635.t4.exon3 | 12251649 | 12251677 |
| chr_3 | g1635 | g1635.t4 | cds | g1635.t4.CDS3 | 12251649 | 12251677 |
| chr_3 | g1635 | g1635.t4 | exon | g1635.t4.exon4 | 12253225 | 12253310 |
| chr_3 | g1635 | g1635.t4 | cds | g1635.t4.CDS4 | 12253225 | 12253310 |
| chr_3 | g1635 | g1635.t4 | TSS | g1635.t4 | 12253558 | 12253558 |
| chr_3 | g1635 | g1635.t4 | TTS | g1635.t4 | NA | NA |
Sequences
>g1635.t4 Gene=g1635 Length=1323
ATGAGTAAAAATTTTGATACCAACATAGCAAAAACAGTTGATCAAACGACGATAAGAAAT
GTGGAGAGTGTGGTACCAAAAAAGAGACAAGAACTTTTGAAGATAGATGGATGGGGTTAT
AATGATTCAAAATTTTACGTCGATGATTATAGTATTTTCTTCTCTGGCTCACGTTATGCA
ATTGGAAATGATGTTGAACTATCAAATTTCCGTGATTGGGTGGGAGAAAAATTCGAGCTT
TCAGTTCTCGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAATGAAACA
TTTTACAATGCGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGATCGTTTT
ATTCGCTGTCATGGTCAAGCTCTTCAAGACATTAATTACGTAAGAACTAACAAATTTAAA
CGCATTCCCGATTTAATTCTTTGGCCAAAGTGTCATGATGATGTTGTAAAAATTGTAAAG
TTAGCCGATGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGTTAGTGGT
TCTATCACTTGTCCGCAAGACGAAGAACGTTCAATTGTCGTCATTGATACTTCACAAATG
AATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTTGAAAGTGGTATTATT
GGACAGGATTTAGAAAGAACACTAAAAGATGAAGGCTTAACAATGGGACATGAACCAGAT
AGTATTGAATTTTCTACTCTTGGTGGATGGATTGCAACTAGAGCATCGGGCATGAAAAAG
AATGTCTATGGCAATATTGAAGACATTGTTATACGAGTGAAAATGGTGACATGCAAAGGT
GTACTTGAACGGAATATTTCAGCTCCTCGTGTTAGTTGTGGACCTGATTTCGATCAGTTA
ATACTTGGTAGTGAAGGAACACTTGGTGTTGTCACCGAAGTTATGGTCAAAGTTCGACCT
TTGCCTGCTGTTAAAAAGTATGGCTCACTTGTATTTCCTAATTATGAAATTGGTGTTTGT
TGTCTACGTGAGATTGCCAAGAGGCGATGTCAACCAGCTTCAATAAGATTAATGGACAAT
GAACAATTTCATTTTGGACAATCACTTAAAGTCGATAATGGATTATTTTCAAAATTTTTC
AATAGTTTAAAAATGTTTTTATTGACTAAAGTTAAAGGATATGATTTGATGAAAATTTCT
GTTGCAACATTGCTCTTTGAAGGAGATAAAGAAGAAGTTGAAAAACAGGAAAAATTAATT
TACGAAATTGCTGATCGATATTCTGGTTTAAAAGCTGGTGAAACAAATGGACAAAAAGGA
TAT
>g1635.t4 Gene=g1635 Length=441
MSKNFDTNIAKTVDQTTIRNVESVVPKKRQELLKIDGWGYNDSKFYVDDYSIFFSGSRYA
IGNDVELSNFRDWVGEKFELSVLEKPKLPTTFPEPILNETFYNAIKDMKMDYSVDGEDRF
IRCHGQALQDINYVRTNKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSG
SITCPQDEERSIVVIDTSQMNRLLWLDKENLVACFESGIIGQDLERTLKDEGLTMGHEPD
SIEFSTLGGWIATRASGMKKNVYGNIEDIVIRVKMVTCKGVLERNISAPRVSCGPDFDQL
ILGSEGTLGVVTEVMVKVRPLPAVKKYGSLVFPNYEIGVCCLREIAKRRCQPASIRLMDN
EQFHFGQSLKVDNGLFSKFFNSLKMFLLTKVKGYDLMKISVATLLFEGDKEEVEKQEKLI
YEIADRYSGLKAGETNGQKGY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g1635.t4 | Gene3D | G3DSA:3.30.43.10 | - | 33 | 198 | 0.000 |
| 9 | g1635.t4 | Gene3D | G3DSA:3.30.160.650 | - | 42 | 85 | 0.000 |
| 7 | g1635.t4 | Gene3D | G3DSA:3.30.465.10 | - | 201 | 321 | 0.000 |
| 6 | g1635.t4 | Gene3D | G3DSA:3.30.70.3450 | - | 322 | 441 | 0.000 |
| 3 | g1635.t4 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 10 | 441 | 0.000 |
| 1 | g1635.t4 | Pfam | PF01565 | FAD binding domain | 143 | 282 | 0.000 |
| 2 | g1635.t4 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 321 | 432 | 0.000 |
| 10 | g1635.t4 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 139 | 321 | 25.087 |
| 5 | g1635.t4 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 97 | 322 | 0.000 |
| 4 | g1635.t4 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 300 | 436 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed