Gene loci information

Transcript annotation

  • This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1635 g1635.t5 isoform g1635.t5 12251070 12253310
chr_3 g1635 g1635.t5 exon g1635.t5.exon1 12251070 12251579
chr_3 g1635 g1635.t5 cds g1635.t5.CDS1 12251071 12251579
chr_3 g1635 g1635.t5 exon g1635.t5.exon2 12251649 12251677
chr_3 g1635 g1635.t5 cds g1635.t5.CDS2 12251649 12251677
chr_3 g1635 g1635.t5 exon g1635.t5.exon3 12253225 12253310
chr_3 g1635 g1635.t5 cds g1635.t5.CDS3 12253225 12253310
chr_3 g1635 g1635.t5 TSS g1635.t5 12253558 12253558
chr_3 g1635 g1635.t5 TTS g1635.t5 NA NA

Sequences

>g1635.t5 Gene=g1635 Length=625
ATGAGTAAAAATTTTGATACCAACATAGCAAAAACAGTTGATCAAACGACGATAAGAAAT
GTGGAGAGTGTGGTACCAAAAAAGAGACAAGAACTTTTGAAGATAGATGGATGGGGTTAT
AATGATTCAAAATTTTACGTCGATGATTATAGTATTTTCTTCTCTGGCTCACGTTATGCA
ATTGGAAATGATGTTGAACTATCAAATTTCCGTGATTGGGTGGGAGAAAAATTCGAGCTT
TCAGTTCTCGAAAAACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTGAATGAAACA
TTTTACAATGCGATAAAAGATATGAAAATGGATTATTCAGTAGATGGTGAAGATCGTTTT
ATTCGCTGTCATGGTCAAGCTCTTCAAGACATTAATTACGTAAGAACTAACAAATTTAAA
CGCATTCCCGATTTAATTCTTTGGCCAAAGTGTCATGATGATGTTGTAAAAATTGTAAAG
TTAGCCGATGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGTGTTAGTGGT
TCTATCACTTGTCCGCAAGACGAAGAACGTTCAATTGTCGTCATTGATACTTCACAAATG
AATCGACTTTTATGGCTTGACAAAG

>g1635.t5 Gene=g1635 Length=208
MSKNFDTNIAKTVDQTTIRNVESVVPKKRQELLKIDGWGYNDSKFYVDDYSIFFSGSRYA
IGNDVELSNFRDWVGEKFELSVLEKPKLPTTFPEPILNETFYNAIKDMKMDYSVDGEDRF
IRCHGQALQDINYVRTNKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTSVSG
SITCPQDEERSIVVIDTSQMNRLLWLDK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g1635.t5 Gene3D G3DSA:3.30.43.10 - 33 198 0.000
5 g1635.t5 Gene3D G3DSA:3.30.160.650 - 42 85 0.000
2 g1635.t5 PANTHER PTHR46568 ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL 10 208 0.000
1 g1635.t5 Pfam PF01565 FAD binding domain 143 207 0.000
6 g1635.t5 ProSiteProfiles PS51387 PCMH-type FAD-binding domain profile. 139 208 11.787
3 g1635.t5 SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like 96 207 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008609 alkylglycerone-phosphate synthase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed