General information for g16362.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as AH receptor-interacting protein.
Parent gene
- The parent gene g16362 is located on chr_4: 9200546..9201502 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16362 | g16362.t1 | TSS | g16362.t1 | 9200463 | 9200463 |
| chr_4 | g16362 | g16362.t1 | isoform | g16362.t1 | 9200546 | 9201502 |
| chr_4 | g16362 | g16362.t1 | exon | g16362.t1.exon1 | 9200546 | 9201502 |
| chr_4 | g16362 | g16362.t1 | cds | g16362.t1.CDS1 | 9200546 | 9201502 |
| chr_4 | g16362 | g16362.t1 | TTS | g16362.t1 | 9201686 | 9201686 |
Sequences
>g16362.t1 Gene=g16362 Length=957
ATGTGTGACATAAATGAAGCTTTAATTAAAAAAGAAACAATTTATGCTGGTACCAAATAC
ATTCCATTAAAAGCTGGTACAAAAGTGAAATTTCATTATGAAACCAAAAGAGCTGACAAT
CAAAAAATAATCGATGATTCTCGAAAACCAAATCACAAACCAATGGAATTAGTTCTTGGC
AAGAAATTTAAGCTAGAAGTTTGGGAAGTGATTGTACAAAAAATGTCATTAAATGAAGTT
GCAAGATTTACAGTTGACAAGTCACTAGTGCAGCAATATCCATTTATATCAAAAACAATT
CGTGATGCAGTAAAACATCCAGAAGAAAGAAAACATTGCTGTGGAATGACATTAAATACA
GAAGGTCTTGGTTATTCTGATCTCGATGAACTTTTTAAAAATCCATCAGATTTAATTTTC
ACACTTGAAATTCTTTCAATTGAACTTCCTGAAGAATATGAAAAAGAATCTTGGCAACTC
AATGAAGATGAAAAATTAAAAGCTGTCGAAGATTATCGACTTAAAGGGAATGAATTTTTC
AAAAATAATCAAATTTTGGAAGCCGAAGAGAGCTATTCGAAAGCACTTGGAATTGTTGAG
CAATTGATGCTTAGAGAAAAACCAAAAGATGTTGAATGGATGAATTTGGCTAAAATTAAG
ACTCCTTTACTTTTAAATTACTCACAATGTAAATTATTGCAGAAAGAATATTATCGTGTC
ATAGAAATTTGCACTGAAGTTTTATCTTATGATCCTGACAATCTTAAAGCACTTTTTAGA
CGTGGCAAAGCTCATGTTGGTGCGTGGAATCCAGAAAAAGCACAAGAAGATTTTCATAGA
TGTATTGAACTTGATCAAAATTTGAAAGTGACTGTTACGAAAGAAATCAATGCATTAAAG
GAGAAAATTAAAGAATATGAAAATCAAGATAAATCAAAGTTTAGGAAAATGTTTTAA
>g16362.t1 Gene=g16362 Length=318
MCDINEALIKKETIYAGTKYIPLKAGTKVKFHYETKRADNQKIIDDSRKPNHKPMELVLG
KKFKLEVWEVIVQKMSLNEVARFTVDKSLVQQYPFISKTIRDAVKHPEERKHCCGMTLNT
EGLGYSDLDELFKNPSDLIFTLEILSIELPEEYEKESWQLNEDEKLKAVEDYRLKGNEFF
KNNQILEAEESYSKALGIVEQLMLREKPKDVEWMNLAKIKTPLLLNYSQCKLLQKEYYRV
IEICTEVLSYDPDNLKALFRRGKAHVGAWNPEKAQEDFHRCIELDQNLKVTVTKEINALK
EKIKEYENQDKSKFRKMF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16362.t1 | Coils | Coil | Coil | 289 | 316 | - |
| 9 | g16362.t1 | Gene3D | G3DSA:3.10.50.40 | - | 2 | 156 | 1.5E-53 |
| 8 | g16362.t1 | Gene3D | G3DSA:1.25.40.10 | - | 157 | 318 | 2.4E-50 |
| 2 | g16362.t1 | PANTHER | PTHR11242 | ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED | 7 | 318 | 6.4E-96 |
| 1 | g16362.t1 | Pfam | PF00254 | FKBP-type peptidyl-prolyl cis-trans isomerase | 23 | 89 | 3.4E-12 |
| 11 | g16362.t1 | ProSiteProfiles | PS50293 | TPR repeat region circular profile. | 221 | 288 | 10.979 |
| 6 | g16362.t1 | SMART | SM00028 | tpr_5 | 169 | 202 | 0.53 |
| 7 | g16362.t1 | SMART | SM00028 | tpr_5 | 221 | 254 | 100.0 |
| 5 | g16362.t1 | SMART | SM00028 | tpr_5 | 255 | 288 | 2.5 |
| 4 | g16362.t1 | SUPERFAMILY | SSF54534 | FKBP-like | 8 | 147 | 4.91E-16 |
| 3 | g16362.t1 | SUPERFAMILY | SSF48452 | TPR-like | 162 | 309 | 4.03E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | MF |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K17767 (AH receptor-interacting protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
