Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16363 g16363.t3 TSS g16363.t3 9202397 9202397
chr_4 g16363 g16363.t3 isoform g16363.t3 9202433 9204965
chr_4 g16363 g16363.t3 exon g16363.t3.exon1 9202433 9202703
chr_4 g16363 g16363.t3 cds g16363.t3.CDS1 9202433 9202703
chr_4 g16363 g16363.t3 exon g16363.t3.exon2 9204272 9204965
chr_4 g16363 g16363.t3 cds g16363.t3.CDS2 9204272 9204321
chr_4 g16363 g16363.t3 TTS g16363.t3 9204953 9204953

Sequences

>g16363.t3 Gene=g16363 Length=965
ATGAAAACTTTCGTGACTGTTTTATTTTGTGCCATTCTTTTGGTTTCTTCATCTTTTGCA
TTAAAAATTTCAATCAAAATTTCTGAAACTAAAAAAATTTCATCACTAAATAAAAATGCG
GAACTTTTCAACAATTTTTTGAAAGATTTCAATATTGAACTTTCGCCAGACGATAATTTC
GAAGAAAGACTTGCAGTTTTTATGGAAAATTATAGAAAAATTCAAGAACACAATAAAAAA
TATGAGAAAGGACTTGTTTCATTCAGCATGGGTTTTTGCACTCCTTACTTTTGTGTGGTG
GTTCACGTTATGATGTCATGAAATATTCAATAACTCACAAAGGATGTGCATCAGGAAAAT
CTTATCCATTTAAAGAACGTGTGGTTAATTCTTGTTCATTTAAAAGACCTCGTGTAAAAA
ATAGCAAAGTCAAGAAAGTTTTCGCATTAAAAACTGAAAAATTAATGATGCAAGCTTTGG
TAAAATATGGACCAATTTCAGCAGGACTTATTGTTTATCCCAGTTTGAATTATTATAAAA
AAGGAATTTATGAAAAAAACCAAATGAGACAAAAAATGGATACCACGCGATTTTAATCGT
TGGATTTGGTCAAGATAATGCTGGAAGGAAGTATTGGATTATCAGAAACTCATGGGGTTA
GTTGAAAATGATTAATTTTTTATAAAAATAAATTTCCTAATCTTTTCTTTGTTTGGCTTC
TTTTTAAAAATAGCTCCACGATGGGGTGAAAGTGTCTATTTTAGGATAAAAAGAGGAGTC
AATATGTGTAATCTTGAATCAAAACCATCTTTGATTCCACAAATTGAATAATTTTAAGTG
GTTTATGAATACACAATGAGTGATTTATCATCAAACAGTTTTATTTTAATTATATATCAA
AACTATGTCATAATCAAGTCTGAATAAATGAATTCTGAAAAATTGTGGTTTATAAATAAA
AAAAT

>g16363.t3 Gene=g16363 Length=106
MKTFVTVLFCAILLVSSSFALKISIKISETKKISSLNKNAELFNNFLKDFNIELSPDDNF
EERLAVFMENYRKIQEHNKKYEKGLVSFSMGFCTPYFCVVVHVMMS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g16363.t3 Gene3D G3DSA:3.90.70.10 Cysteine proteinases 34 96 4.0E-6
1 g16363.t3 Pfam PF08246 Cathepsin propeptide inhibitor domain (I29) 43 90 2.0E-7
7 g16363.t3 Phobius SIGNAL_PEPTIDE Signal peptide region 1 20 -
8 g16363.t3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
9 g16363.t3 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 15 -
10 g16363.t3 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 16 20 -
6 g16363.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 21 106 -
13 g16363.t3 SMART SM00848 Inhibitor_I29_2 43 97 5.6E-6
2 g16363.t3 SUPERFAMILY SSF54001 Cysteine proteinases 40 92 1.64E-6
4 g16363.t3 SignalP_EUK SignalP-noTM SignalP-noTM 1 20 -
3 g16363.t3 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM 1 20 -
11 g16363.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 4 21 -
12 g16363.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 83 105 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed