General information for g16369.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative fatty acyl-CoA reductase CG5065.
Parent gene
- The parent gene g16369 is located on chr_4: 9235138..9237445 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16369 | g16369.t1 | isoform | g16369.t1 | 9235138 | 9237445 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon1 | 9235138 | 9235180 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS1 | 9235138 | 9235180 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon2 | 9235302 | 9235425 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS2 | 9235302 | 9235425 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon3 | 9235485 | 9235584 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS3 | 9235485 | 9235584 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon4 | 9235646 | 9235780 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS4 | 9235646 | 9235780 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon5 | 9235847 | 9235964 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS5 | 9235847 | 9235964 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon6 | 9236259 | 9236404 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS6 | 9236259 | 9236404 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon7 | 9236487 | 9236649 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS7 | 9236487 | 9236649 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon8 | 9236787 | 9236919 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS8 | 9236787 | 9236919 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon9 | 9237005 | 9237262 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS9 | 9237005 | 9237262 |
| chr_4 | g16369 | g16369.t1 | exon | g16369.t1.exon10 | 9237316 | 9237445 |
| chr_4 | g16369 | g16369.t1 | cds | g16369.t1.CDS10 | 9237316 | 9237445 |
| chr_4 | g16369 | g16369.t1 | TSS | g16369.t1 | NA | NA |
| chr_4 | g16369 | g16369.t1 | TTS | g16369.t1 | NA | NA |
Sequences
>g16369.t1 Gene=g16369 Length=1350
ATGTCAAGACGAATTTCAATTCCTGAATTTTATAGTGGAAAATCTTCAGAGAGAGTTCAA
GAAATTACAAATTCGCCACTTTTTGATGTCATTCGTGCAAAAAATCCAGAAGCATTCAAG
AAAATTTCTTTAATTGAAGGCGATATTACAATGCAAAATTTAGGAATAACAATTAGTTTC
ACAGAACCAATGAAAATTGCAGTCGCTACAAATTTACAATCAGTGAATGAATTAATAAAT
TTAGCAAGAAAAGTGAAAAAACTTGATTCTTTTGTGCATGTTTCGACAGCTTACACAAAT
TGGTTTGAAAAAGATGTGAAGGAAATTTTTTACAAACCAAATTATGATCCGAAAAAGGTC
ATTGAAATGTGCAAAACGCTGAGTGATGAAGAACTAGGAAAGATGATTCCAACACTTGGA
AAGCACAATAATACTTATACTTTTTCTAAATCACTATCAGAATACCTTATTTTACAAGAG
GGTGTTGATTTGCCAATAACAGTTGTTAGACCATCAGTTGTAATTTCAAGTTTGAAAGAA
CCATTTCCTGGATGGGTTGACAATTGGGGTGGTACAACTCCTTTTATTTTCATGATAGCT
AAAGGTCTTTTTAGACATCCTCATAATCTTGGTGATAACACAATTGATGCTATTCCTGCT
GATGTGACTGTAAACATGGTTTTGGCTGCTGGATGGAAAGTTGGAACTGATACAAATGCG
AGAAATTCAGTTCCTGAAATTTACAATTGCACAACAAGTTCGAATAATCCAACTACATAT
GATGAAGTTTATGGTGGTTTTGCTGAACTAGGAAAAAAGTATCCTTACTCTGACATAATT
TGGTATCCAAAAGTGAAACTTCATCATTCATATCTGATGTCTCAAATATATGGATTTGCT
TTTGAAAAAGTTCCAGTTTATTTTGCTGATTTTTTAATGAAACTTGCTGGAAAGAAGCCA
AAACTTATGAAAATAATAAACTTCAGCTACGATAATTATGAAATTGTAAGATTTGTTCCA
ACAAATAGATTTGTTTTTCGAAGTGAAAATCCTATAAAATTAATGAATGTCATGAGTCCA
AAAGATTTGAAAGATTTTGATTTTGATGTAAGAAAAATTAATTGGCAAAAAGGCATAGAA
ACTTATTATCTTGGAATACGAAAATATTTGGCAAACGATAAATCAGAAAATTGGCTAGTT
TTGAGGAAAAAAGTTCAAAGATTAAAATATGCACATTATGCATTAACTGGATCGACGATA
GCTGTATCATTGTTTTTACTGAACAAAAGTAGAAGTTTATTTCAAAAGAGAAAAGAAAAT
AATGAAATTAAGCTTTTAAATTTAATGTAG
>g16369.t1 Gene=g16369 Length=449
MSRRISIPEFYSGKSSERVQEITNSPLFDVIRAKNPEAFKKISLIEGDITMQNLGITISF
TEPMKIAVATNLQSVNELINLARKVKKLDSFVHVSTAYTNWFEKDVKEIFYKPNYDPKKV
IEMCKTLSDEELGKMIPTLGKHNNTYTFSKSLSEYLILQEGVDLPITVVRPSVVISSLKE
PFPGWVDNWGGTTPFIFMIAKGLFRHPHNLGDNTIDAIPADVTVNMVLAAGWKVGTDTNA
RNSVPEIYNCTTSSNNPTTYDEVYGGFAELGKKYPYSDIIWYPKVKLHHSYLMSQIYGFA
FEKVPVYFADFLMKLAGKKPKLMKIINFSYDNYEIVRFVPTNRFVFRSENPIKLMNVMSP
KDLKDFDFDVRKINWQKGIETYYLGIRKYLANDKSENWLVLRKKVQRLKYAHYALTGSTI
AVSLFLLNKSRSLFQKRKENNEIKLLNLM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g16369.t1 | CDD | cd05236 | FAR-N_SDR_e | 12 | 275 | 5.76363E-79 |
| 12 | g16369.t1 | CDD | cd09071 | FAR_C | 301 | 390 | 2.05594E-21 |
| 7 | g16369.t1 | Gene3D | G3DSA:3.40.50.720 | - | 12 | 292 | 1.9E-36 |
| 3 | g16369.t1 | PANTHER | PTHR11011:SF60 | FATTY ACYL-COA REDUCTASE 2 | 14 | 426 | 7.5E-99 |
| 4 | g16369.t1 | PANTHER | PTHR11011 | MALE STERILITY PROTEIN 2-RELATED | 14 | 426 | 7.5E-99 |
| 1 | g16369.t1 | Pfam | PF07993 | Male sterility protein | 57 | 226 | 1.4E-32 |
| 2 | g16369.t1 | Pfam | PF03015 | Male sterility protein | 302 | 392 | 4.2E-21 |
| 9 | g16369.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 409 | - |
| 10 | g16369.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 410 | 428 | - |
| 8 | g16369.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 429 | 449 | - |
| 6 | g16369.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 61 | 277 | 2.06E-13 |
| 5 | g16369.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 410 | 427 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0080019 | fatty-acyl-CoA reductase (alcohol-forming) activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed