General information for g16377.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16377 is located on chr_4: 9278669..9287472 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16377 | g16377.t17 | isoform | g16377.t17 | 9278617 | 9279786 |
| chr_4 | g16377 | g16377.t17 | exon | g16377.t17.exon1 | 9278617 | 9279508 |
| chr_4 | g16377 | g16377.t17 | cds | g16377.t17.CDS1 | 9278648 | 9278971 |
| chr_4 | g16377 | g16377.t17 | exon | g16377.t17.exon2 | 9279621 | 9279786 |
| chr_4 | g16377 | g16377.t17 | TSS | g16377.t17 | NA | NA |
| chr_4 | g16377 | g16377.t17 | TTS | g16377.t17 | NA | NA |
Sequences
>g16377.t17 Gene=g16377 Length=1058
ATTTTTTGAAACTTTTCATAAATTTTTATTAATGCTTTTTATTTTTAGTTACAACTTCAC
TTTTTCATCATCACCAATGGCAACAGCTGAAGCATTTGAAGAAGAAAGCAAGCAAATTTA
TCACATGTCATATCTTTATTATACAGTTTTTGGTGCACTTTTAGTCATCATCATTTCAGT
TCTTTTAAGTTTCATTTTTGGTTTTCAAGATGCAAGAAAAATTGATAAAAGACTTGTTGC
ACCTTTCATGAGGAAATTCATTCAATTTGAAAATCAAGAAATGAAAAATGAAAATTTAAA
ATATGAAGGTAGAAAATTGATGCAAGTTTATAATTTTAAAGAAATTGAAGAATAGAAATT
TTCATTTAATTCAACTTTATTTTTTGTTCGAAATTGAATTTTTTCACTAAATTTTCAACT
TTTCTATCATCAAAACTTTTCACTAATAAACCAAAAAAAAATTTTTTCTCATAAATTCAA
AATTTGTTTATTCTTTATGAGCAGCAGTTGTTGTTGGAACAACTTTTGGAGTTGTTGCTG
CTATGTCACTGCCGATTGTTTTCTCACCAGGACTTGCAACACTTGCAGCTCCAACTGGTG
GTGAAATATTTGTAGGTGATGATGCTACTGGTTTATCAGCAGTTCCTGCAGGTTTAGAAG
TTGTTGCTGCTGCTGCTACTGCTGGTGGTTGTGGTGTACCTGATAAACCTGAAGTCGGTG
GTGCAGCTTTTGGTGGTGGTGAGACAGAATGTTGTCCATCAGTTGCTTTCGTTGGATTTC
CAGGAAGTGCTGCTGGCGGATTTGGATGAGATGCCGTATCCATTTTTGGTGTTGTTGGTT
TTACATTTTTTTCATCAGATGAGCTGTCACTGCTTGGTTTTGGTTTTGTGTCTACGATTT
CTCAATTTATCAATTGGATAAAAGCTAGCACTTCCTTGAGGAGTTTGAAGTGGTAAAGTA
ATAACACCAGGATAAGTTGTGAGCACTTGAGGACGTGATTGACCCTCAATTATAACAACA
GCAAATAAAATTGCTAAAAATGAAATAAATTTCAACAT
>g16377.t17 Gene=g16377 Length=107
MLFIFSYNFTFSSSPMATAEAFEEESKQIYHMSYLYYTVFGALLVIIISVLLSFIFGFQD
ARKIDKRLVAPFMRKFIQFENQEMKNENLKYEGRKLMQVYNFKEIEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g16377.t17 | PANTHER | PTHR42985:SF20 | FI02016P | 14 | 92 | 2.1E-13 |
| 2 | g16377.t17 | PANTHER | PTHR42985 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER | 14 | 92 | 2.1E-13 |
| 6 | g16377.t17 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 19 | - |
| 7 | g16377.t17 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 1 | - |
| 8 | g16377.t17 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 2 | 11 | - |
| 10 | g16377.t17 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 12 | 19 | - |
| 5 | g16377.t17 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 20 | 34 | - |
| 9 | g16377.t17 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 35 | 58 | - |
| 4 | g16377.t17 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 59 | 107 | - |
| 3 | g16377.t17 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 36 | 58 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed