General information for g1638.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1638 is located on chr_3: 12264640..12267085 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1638 | g1638.t1 | TTS | g1638.t1 | 12264572 | 12264572 |
| chr_3 | g1638 | g1638.t1 | isoform | g1638.t1 | 12264640 | 12267085 |
| chr_3 | g1638 | g1638.t1 | exon | g1638.t1.exon1 | 12264640 | 12264833 |
| chr_3 | g1638 | g1638.t1 | cds | g1638.t1.CDS1 | 12264640 | 12264833 |
| chr_3 | g1638 | g1638.t1 | exon | g1638.t1.exon2 | 12264889 | 12265171 |
| chr_3 | g1638 | g1638.t1 | cds | g1638.t1.CDS2 | 12264889 | 12265171 |
| chr_3 | g1638 | g1638.t1 | exon | g1638.t1.exon3 | 12266671 | 12266700 |
| chr_3 | g1638 | g1638.t1 | cds | g1638.t1.CDS3 | 12266671 | 12266700 |
| chr_3 | g1638 | g1638.t1 | exon | g1638.t1.exon4 | 12266759 | 12267085 |
| chr_3 | g1638 | g1638.t1 | cds | g1638.t1.CDS4 | 12266759 | 12267085 |
| chr_3 | g1638 | g1638.t1 | TSS | g1638.t1 | NA | NA |
Sequences
>g1638.t1 Gene=g1638 Length=834
ATGGCTCGCTTGTATTTCCTAACTTTGAAATGGGTGTCCGTTGTCTACGTGAGATTGCCA
AGAGGCGATGTCAAAATGGACAATGAACAATTTCATTTTGGACAAGGACTTAAAGTCGAA
CATGGATTAGTTTCAAAATTTATCGATGGACTGAAAAAATTTTTATTGACTAAAGTCAAA
GGATATGATTTGATGAAAATTTCTGTTGCAACATTGCTTTTTGAAGGAGATAAAGAAGAA
GTTGAAAGATTAGAAAAATTAATTTACGAAATTGCTGATCGATATTCTGGTTTAAAAGCT
GGTGAAACAAATGGTCAGAAAGGCTATGTCTTGACTTACGTCATTGCATACATTCGGGAT
CTTGGTCTTAATTATGGTATAATTGCTGAGTCATTTGAAACTTCAGTGCCATGGGATAAA
TGCGAATCGCTGTGTAATAATGTAAAGGCATGTATGCATGCAGAATGCAAGAAACATGGA
ATCATTTACTACTTAGTCAGCTGTCGTGTGACGCAAACTTATGATGCGGGTGCATGTGTC
TATTTCTACTTTGGTCTTCGATGGAATTCTGATTGTTCTGATCCTGTTGGTCTGTATGAA
GAAATTGAAAATAAAGCAAGAGATGAAATTTTGGCTTCAGGTGGTAGCATAAGTCATCAT
CATGGGATCGGAAAAATACGTGCTAAATGGTACAAGCAAAGTGTTTCATCTATTGGCGTA
AACCTCTACAAGTCAGCAAAACTTGAACTTGATCCTAAAAATACATTTGGCCTCAATAAT
TTACTTACTGAAGAAGATCAAATTAATTTTGAAACATTAAATTCAAAATTATAA
>g1638.t1 Gene=g1638 Length=277
MARLYFLTLKWVSVVYVRLPRGDVKMDNEQFHFGQGLKVEHGLVSKFIDGLKKFLLTKVK
GYDLMKISVATLLFEGDKEEVERLEKLIYEIADRYSGLKAGETNGQKGYVLTYVIAYIRD
LGLNYGIIAESFETSVPWDKCESLCNNVKACMHAECKKHGIIYYLVSCRVTQTYDAGACV
YFYFGLRWNSDCSDPVGLYEEIENKARDEILASGGSISHHHGIGKIRAKWYKQSVSSIGV
NLYKSAKLELDPKNTFGLNNLLTEEDQINFETLNSKL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g1638.t1 | Gene3D | G3DSA:3.30.70.3450 | - | 16 | 113 | 0 |
| 5 | g1638.t1 | Gene3D | G3DSA:3.30.300.330 | - | 114 | 221 | 0 |
| 6 | g1638.t1 | Gene3D | G3DSA:1.10.45.10 | - | 222 | 262 | 0 |
| 2 | g1638.t1 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 26 | 262 | 0 |
| 1 | g1638.t1 | Pfam | PF02913 | FAD linked oxidases, C-terminal domain | 26 | 256 | 0 |
| 3 | g1638.t1 | SUPERFAMILY | SSF55103 | FAD-linked oxidases, C-terminal domain | 70 | 259 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0003824 | catalytic activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
