General information for g16387.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Transcription factor AP-1.
Parent gene
- The parent gene g16387 is located on chr_4: 9306178..9307079 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16387 | g16387.t3 | TTS | g16387.t3 | 9306102 | 9306102 |
| chr_4 | g16387 | g16387.t3 | isoform | g16387.t3 | 9306178 | 9307079 |
| chr_4 | g16387 | g16387.t3 | exon | g16387.t3.exon1 | 9306178 | 9306742 |
| chr_4 | g16387 | g16387.t3 | cds | g16387.t3.CDS1 | 9306365 | 9306742 |
| chr_4 | g16387 | g16387.t3 | exon | g16387.t3.exon2 | 9306822 | 9307079 |
| chr_4 | g16387 | g16387.t3 | cds | g16387.t3.CDS2 | 9306822 | 9307079 |
| chr_4 | g16387 | g16387.t3 | TSS | g16387.t3 | 9307271 | 9307271 |
Sequences
>g16387.t3 Gene=g16387 Length=823
ATGAGAAACTTACGAGGAAGTGATCAATCTAAGCCCGTCGATAATAATTCAAATATGATG
AAAAGACCATTAACACTAGATTTAAATAAGAAAATAAACACTGCAGGCGGAAGTCAGCTG
TTATTGACAACTCCTGATGTAGAAAAAATGGTGATAAAAAGTCCAGAATTAGAAAATTTT
ATTCTTAATGCTGACACACTTCAAACACCTGGACAAATACTTCCAACTCCTTCAACTTCT
GCTGCCTTTGCTCCTAAAATAACACAAGAACAAGAAATGTATGCAAAAGGCTTTGAAGAA
GCGCTCAATAAAATAAAAACTCAACAAGAAGGAACAGTTTCAGTCCCAGTTCCACAACAG
TCAATAACAAAGCCAACACCTAGTATGAGTGGAGGTGGAATCAATTACAGCGAATCAGAC
AGTTCAAATTTAATTATTCAACAAATTAAAGAAGAACCTCAACAACCACCAAGTCCACAA
CAAGAACAAAGTTTAAATCCTATTGACATGGAATCACAAGAAAGAATTAAATTGGAAAGA
AAAAGACAGAGAAATCGTGTTGCTGCTTCAAAATGTAGAAAACGAAAACTTGGTAAGAAT
TCAAAAATTCTTCTAAATTATTCAAAAATCTTTTAATTTTTTTTTTAATTTTCCAATTTT
AGAGAGAATTTCAAAACTTGAAGATCGCGTAAAAGTCCTCAAAGTAGAAAACCATGAACT
TGGTGCAGTTTTAGTGAACCTTAAGCAACATGTTTTTGACCTTAAACAACAAGTTATTGA
ACATCATCAAAATTATGGTTGTAAAATTACACTAAAAAACTGA
>g16387.t3 Gene=g16387 Length=211
MRNLRGSDQSKPVDNNSNMMKRPLTLDLNKKINTAGGSQLLLTTPDVEKMVIKSPELENF
ILNADTLQTPGQILPTPSTSAAFAPKITQEQEMYAKGFEEALNKIKTQQEGTVSVPVPQQ
SITKPTPSMSGGGINYSESDSSNLIIQQIKEEPQQPPSPQQEQSLNPIDMESQERIKLER
KRQRNRVAASKCRKRKLGKNSKILLNYSKIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g16387.t3 | Gene3D | G3DSA:1.20.5.170 | - | 177 | 203 | 3.5E-5 |
| 11 | g16387.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - |
| 10 | g16387.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 193 | - |
| 12 | g16387.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 170 | - |
| 3 | g16387.t3 | PANTHER | PTHR11462:SF8 | TRANSCRIPTION FACTOR AP-1 | 14 | 142 | 5.1E-26 |
| 5 | g16387.t3 | PANTHER | PTHR11462 | JUN TRANSCRIPTION FACTOR-RELATED | 14 | 142 | 5.1E-26 |
| 2 | g16387.t3 | PANTHER | PTHR11462:SF8 | TRANSCRIPTION FACTOR AP-1 | 146 | 202 | 5.1E-26 |
| 4 | g16387.t3 | PANTHER | PTHR11462 | JUN TRANSCRIPTION FACTOR-RELATED | 146 | 202 | 5.1E-26 |
| 6 | g16387.t3 | PRINTS | PR00043 | Jun transcription factor signature | 162 | 182 | 3.0E-13 |
| 7 | g16387.t3 | PRINTS | PR00043 | Jun transcription factor signature | 184 | 200 | 3.0E-13 |
| 1 | g16387.t3 | Pfam | PF03957 | Jun-like transcription factor | 15 | 131 | 2.5E-12 |
| 9 | g16387.t3 | ProSitePatterns | PS00036 | Basic-leucine zipper (bZIP) domain signature. | 180 | 195 | - |
| 8 | g16387.t3 | SUPERFAMILY | SSF47454 | A DNA-binding domain in eukaryotic transcription factors | 165 | 198 | 7.59E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003677 | DNA binding | MF |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
