General information for g16389.t19
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16389 is located on chr_4: 9317104..9317789 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16389 | g16389.t19 | isoform | g16389.t19 | 9313332 | 9317789 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon1 | 9313332 | 9313563 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon2 | 9313627 | 9313762 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon3 | 9314409 | 9314539 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon4 | 9315379 | 9315459 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon5 | 9317090 | 9317383 |
| chr_4 | g16389 | g16389.t19 | cds | g16389.t19.CDS1 | 9317143 | 9317383 |
| chr_4 | g16389 | g16389.t19 | exon | g16389.t19.exon6 | 9317501 | 9317789 |
| chr_4 | g16389 | g16389.t19 | cds | g16389.t19.CDS2 | 9317501 | 9317649 |
| chr_4 | g16389 | g16389.t19 | TTS | g16389.t19 | 9317882 | 9317882 |
| chr_4 | g16389 | g16389.t19 | TSS | g16389.t19 | NA | NA |
Sequences
>g16389.t19 Gene=g16389 Length=1163
ATGTTATTTTGCAAACCGGCATCGACGCCACTGACTTTATATGTTCCAATGTGTGTGCAA
AAAAAAGTTTAAATTATTTTTTTCCGATTTTTTAGAACGTTCAGTTGACGTGCATCAGTC
TCGGGATATTGAAGTAATTTTTAGTTCTTCCCGTTTTTTAATTGTCGATTTTTTCTTTCG
TGCTTTGTGAATTTTTTTAAATTTAATTAATACAAAAAAGGAAGAAAAAAATGGCGCCTG
ACGCAAAAGTACATCAAAATGTGATGAAAACGGAGAGTGATGAAAATTTAAAGTCTAATG
CACCCTTTCGTGCTGAAATTCAATGGCGTAATGTTGCCGTCAACTTGTTTATTCATCTTG
GTTTCTTCTTTTCTTCCTGACATGCTTATGCAATTTGGGTGTCACGATCGGCGTTCACAG
ATTATGGAGTCACAGAAGTTTCAAATGCACTCGTCCAATTAAGCTTCTTCTTACCTTTTT
TTACACAATGGCTGGTCAATCATCGATTTTCCATTGGGTTCAAATTCATCGAGTTCATCA
TAAATTTTCTGAAACTTTAAAGGATCCATTAGATGTGTGATTATTTTAGTCGGTTGGTAC
TGTCTTTCATACCATCCAGAATGTGAAACTGAGATGAAGCGTATTGATATGGATGATATA
AAGGCTGATAAAGACCTGATGTTCCAGTACAAGTACTATTCACATCTTTTCACACTTCTC
AATTTCCTTTCCGTTCTTATTCCATGCTATTTTTGGGGCGAATCATTCAAAATTGCTTTT
TGGGTTTGCTTTGTAACACGTTTTGCCATCAACTTTACACAATTAAATTTCACTAATAGT
GCAAATCATTTCATTGGAAAACGTCCTTATGATAGTATCATAATTATCATCATGTCTTTC
CTTATGATTACCGTACTGGTGAATTTGGTGACATTGGTCACTACAATCTCTCAGCTGTCA
TCATTGATTTCTGGTACAAAATGGGATGGGTTTGGGATCGTAAACTTGTTTCACAAGACA
TGATCAATCGAAGAGTCTTAAGAACTGGCGATGGAAGTCATTGGTTGTCACATGATGAAG
CCCATAAAAATTCAATCTATGGTTATGGTGATAAAGATATTGATGAAGCTGATCAGAAAG
AATTAGAAAGAATGATTGGCTAA
>g16389.t19 Gene=g16389 Length=129
MKRIDMDDIKADKDLMFQYKYYSHLFTLLNFLSVLIPCYFWGESFKIAFWVCFVTRFAIN
FTQLNFTNSANHFIGKRPYDSIIIIIMSFLMITVLVNLVTLVTTISQLSSLISGTKWDGF
GIVNLFHKT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 1 | g16389.t19 | PANTHER | PTHR11351 | ACYL-COA DESATURASE | 2 | 87 | 3.9E-18 |
| 2 | g16389.t19 | PANTHER | PTHR11351:SF61 | RH14937P | 2 | 87 | 3.9E-18 |
| 6 | g16389.t19 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 12 | g16389.t19 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 42 | - |
| 8 | g16389.t19 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 43 | 47 | - |
| 11 | g16389.t19 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 48 | 67 | - |
| 7 | g16389.t19 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 68 | 78 | - |
| 10 | g16389.t19 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 79 | 102 | - |
| 9 | g16389.t19 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 103 | 129 | - |
| 5 | g16389.t19 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
| 4 | g16389.t19 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 47 | 69 | - |
| 3 | g16389.t19 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 82 | 104 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016717 | oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed