General information for g1639.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.
Parent gene
- The parent gene g1639 is located on chr_3: 12269233..12269368 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1639 | g1639.t1 | isoform | g1639.t1 | 12267217 | 12269344 |
| chr_3 | g1639 | g1639.t1 | exon | g1639.t1.exon1 | 12267217 | 12267320 |
| chr_3 | g1639 | g1639.t1 | cds | g1639.t1.CDS1 | 12267217 | 12267320 |
| chr_3 | g1639 | g1639.t1 | exon | g1639.t1.exon2 | 12267381 | 12268016 |
| chr_3 | g1639 | g1639.t1 | cds | g1639.t1.CDS2 | 12267381 | 12268016 |
| chr_3 | g1639 | g1639.t1 | exon | g1639.t1.exon3 | 12268086 | 12268114 |
| chr_3 | g1639 | g1639.t1 | cds | g1639.t1.CDS3 | 12268086 | 12268114 |
| chr_3 | g1639 | g1639.t1 | exon | g1639.t1.exon4 | 12269259 | 12269344 |
| chr_3 | g1639 | g1639.t1 | cds | g1639.t1.CDS4 | 12269259 | 12269344 |
| chr_3 | g1639 | g1639.t1 | TSS | g1639.t1 | 12269634 | 12269634 |
| chr_3 | g1639 | g1639.t1 | TTS | g1639.t1 | NA | NA |
Sequences
>g1639.t1 Gene=g1639 Length=855
ATGAGCAAAAATTTTGATACCAACATAGTGAAAACACTTGATCGAACGACGATAAGAAAT
GTGGAGAGTGTGGTACCAAAAAAGAGACAAGAACTTTTGAAGTGGAATGGATGGGGCTAT
AATGATTCTAAATTTTACATCGAGGATAATAAAGTATTCTTTTCTGGTTCACGTTATCCA
ATTGGAAATGATATTGAACTACCAAATTTTCGTAAATGGATTGAAAAAAATTTTAACCTT
ACTCCAGATGATGCTCTCGAAATACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTG
AATGAAACATTTTACAATACGATAAAAGATATGAAAATGGATTATTCAGTAGACGGTGAA
GATCGTCTGATTCGCTGTCATGGTCAAACTGTACATGACGTTTATTTCGTAAGAGCTAAC
AAATTCAAACGCATTCCCGATTTAATTCTTTGGCCAAAATGTCATGACGATGTTGTTAAA
ATTGTAAAGTTAGCGGATGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGT
GTTAGTGGTTCTATCACTTGTCCGCAAGACGAAGAACGTTCAATTGTCGTCATGGATACT
TCACAAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTTGAAAGT
GGTATTGTTGGACAGGATTTAGAAAGAATTCTTCAAGATGAAGGCTTAACAATGGGACAT
GAACCAGATAGTATTGAATTTTCAACTCTTGGTGGATGGATTGCAACTCGAGCATCGGGC
ATGAAAAAGATGGTCTATGGCAATATGAGACATTGTTATACGAGTGAAAATGGTGACATG
CAAAGGTGTACTTGA
>g1639.t1 Gene=g1639 Length=284
MSKNFDTNIVKTLDRTTIRNVESVVPKKRQELLKWNGWGYNDSKFYIEDNKVFFSGSRYP
IGNDIELPNFRKWIEKNFNLTPDDALEIPKLPTTFPEPILNETFYNTIKDMKMDYSVDGE
DRLIRCHGQTVHDVYFVRANKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTS
VSGSITCPQDEERSIVVMDTSQMNRLLWLDKENLVACFESGIVGQDLERILQDEGLTMGH
EPDSIEFSTLGGWIATRASGMKKMVYGNMRHCYTSENGDMQRCT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g1639.t1 | Gene3D | G3DSA:3.30.43.10 | - | 33 | 201 | 0.000 |
| 6 | g1639.t1 | Gene3D | G3DSA:3.30.160.650 | - | 42 | 85 | 0.000 |
| 4 | g1639.t1 | Gene3D | G3DSA:3.30.465.10 | - | 204 | 276 | 0.000 |
| 2 | g1639.t1 | PANTHER | PTHR46568 | ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL | 14 | 270 | 0.000 |
| 1 | g1639.t1 | Pfam | PF01565 | FAD binding domain | 146 | 274 | 0.000 |
| 7 | g1639.t1 | ProSiteProfiles | PS51387 | PCMH-type FAD-binding domain profile. | 142 | 284 | 16.249 |
| 3 | g1639.t1 | SUPERFAMILY | SSF56176 | FAD-binding/transporter-associated domain-like | 102 | 273 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008609 | alkylglycerone-phosphate synthase activity | MF |
| GO:0050660 | flavin adenine dinucleotide binding | MF |
| GO:0055114 | NA | NA |
| GO:0071949 | FAD binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
| GO:0008610 | lipid biosynthetic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
