Gene loci information

Transcript annotation

  • This transcript has been annotated as Alkyldihydroxyacetonephosphate synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1639 g1639.t2 isoform g1639.t2 12267217 12269344
chr_3 g1639 g1639.t2 exon g1639.t2.exon1 12267217 12268016
chr_3 g1639 g1639.t2 cds g1639.t2.CDS1 12267367 12268016
chr_3 g1639 g1639.t2 exon g1639.t2.exon2 12268086 12268114
chr_3 g1639 g1639.t2 cds g1639.t2.CDS2 12268086 12268114
chr_3 g1639 g1639.t2 exon g1639.t2.exon3 12269259 12269344
chr_3 g1639 g1639.t2 cds g1639.t2.CDS3 12269259 12269344
chr_3 g1639 g1639.t2 TSS g1639.t2 12269634 12269634
chr_3 g1639 g1639.t2 TTS g1639.t2 NA NA

Sequences

>g1639.t2 Gene=g1639 Length=915
ATGAGCAAAAATTTTGATACCAACATAGTGAAAACACTTGATCGAACGACGATAAGAAAT
GTGGAGAGTGTGGTACCAAAAAAGAGACAAGAACTTTTGAAGTGGAATGGATGGGGCTAT
AATGATTCTAAATTTTACATCGAGGATAATAAAGTATTCTTTTCTGGTTCACGTTATCCA
ATTGGAAATGATATTGAACTACCAAATTTTCGTAAATGGATTGAAAAAAATTTTAACCTT
ACTCCAGATGATGCTCTCGAAATACCAAAGTTGCCAACAACTTTTCCAGAACCAATATTG
AATGAAACATTTTACAATACGATAAAAGATATGAAAATGGATTATTCAGTAGACGGTGAA
GATCGTCTGATTCGCTGTCATGGTCAAACTGTACATGACGTTTATTTCGTAAGAGCTAAC
AAATTCAAACGCATTCCCGATTTAATTCTTTGGCCAAAATGTCATGACGATGTTGTTAAA
ATTGTAAAGTTAGCGGATGAAAATAATGTCATGTTAATTCCATTTGGTGGCGGAACAAGT
GTTAGTGGTTCTATCACTTGTCCGCAAGACGAAGAACGTTCAATTGTCGTCATGGATACT
TCACAAATGAATCGACTTTTATGGCTTGACAAAGAGAATCTTGTAGCTTGCTTTGAAAGT
GGTATTGTTGGACAGGATTTAGAAAGAATTCTTCAAGATGAAGGCTTAACAATGGGACAT
GAACCAGATAGTATTGAATTTTCAACTCTTGGTAAATTTAGTTAAAAATGACCTAAAAGT
GAGTAAATTTATTTTTATATTTTTTACAAAGGTGGATGGATTGCAACTCGAGCATCGGGC
ATGAAAAAGATGGTCTATGGCAATATGAGACATTGTTATACGAGTGAAAATGGTGACATG
CAAAGGTGTACTTGA

>g1639.t2 Gene=g1639 Length=254
MSKNFDTNIVKTLDRTTIRNVESVVPKKRQELLKWNGWGYNDSKFYIEDNKVFFSGSRYP
IGNDIELPNFRKWIEKNFNLTPDDALEIPKLPTTFPEPILNETFYNTIKDMKMDYSVDGE
DRLIRCHGQTVHDVYFVRANKFKRIPDLILWPKCHDDVVKIVKLADENNVMLIPFGGGTS
VSGSITCPQDEERSIVVMDTSQMNRLLWLDKENLVACFESGIVGQDLERILQDEGLTMGH
EPDSIEFSTLGKFS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g1639.t2 Gene3D G3DSA:3.30.43.10 - 33 201 0.000
6 g1639.t2 Gene3D G3DSA:3.30.160.650 - 42 85 0.000
4 g1639.t2 Gene3D G3DSA:3.30.465.10 - 204 253 0.000
2 g1639.t2 PANTHER PTHR46568 ALKYLDIHYDROXYACETONEPHOSPHATE SYNTHASE, PEROXISOMAL 14 252 0.000
1 g1639.t2 Pfam PF01565 FAD binding domain 146 251 0.000
7 g1639.t2 ProSiteProfiles PS51387 PCMH-type FAD-binding domain profile. 142 254 14.174
3 g1639.t2 SUPERFAMILY SSF56176 FAD-binding/transporter-associated domain-like 102 251 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0008609 alkylglycerone-phosphate synthase activity MF
GO:0050660 flavin adenine dinucleotide binding MF
GO:0055114 NA NA
GO:0071949 FAD binding MF
GO:0016491 oxidoreductase activity MF
GO:0008610 lipid biosynthetic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed