General information for g16391.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative TBC1 domain family member 7.
Parent gene
- The parent gene g16391 is located on chr_4: 9318868..9320019 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16391 | g16391.t1 | isoform | g16391.t1 | 9318868 | 9320019 |
| chr_4 | g16391 | g16391.t1 | exon | g16391.t1.exon1 | 9318868 | 9319177 |
| chr_4 | g16391 | g16391.t1 | cds | g16391.t1.CDS1 | 9318868 | 9319177 |
| chr_4 | g16391 | g16391.t1 | TTS | g16391.t1 | 9318870 | 9318870 |
| chr_4 | g16391 | g16391.t1 | exon | g16391.t1.exon2 | 9319236 | 9319417 |
| chr_4 | g16391 | g16391.t1 | cds | g16391.t1.CDS2 | 9319236 | 9319417 |
| chr_4 | g16391 | g16391.t1 | exon | g16391.t1.exon3 | 9319484 | 9319592 |
| chr_4 | g16391 | g16391.t1 | cds | g16391.t1.CDS3 | 9319484 | 9319592 |
| chr_4 | g16391 | g16391.t1 | exon | g16391.t1.exon4 | 9319754 | 9320019 |
| chr_4 | g16391 | g16391.t1 | cds | g16391.t1.CDS4 | 9319754 | 9320019 |
| chr_4 | g16391 | g16391.t1 | TSS | g16391.t1 | 9320079 | 9320079 |
Sequences
>g16391.t1 Gene=g16391 Length=867
ATGATGGAAGACGCAAGAAATTTTAGATCAATTTATTATGAAAAAGTCGGTTGTCGTAGT
GTCGAAGAAAAGAAAAGTTTAGAAATTCTTCTCAAAGAAAATCCAGTTTATAAACAAAAA
CTTTTTCAATTTCTAAAATTATTTTCTGTTCCGACCATTCATCGTTCACTTTTATATTGC
TTAGCTCTTAATGTTTATCCTGTTTATATGGAAAGTAAAGAATTTGTCATGCAGCAGAAG
AAGGAAATTTATAGTGATTTATTAAGAGCATTAAATGTAATGAAATTTATTGATGAAAAA
ACACCAAGAGCGAGAATTTTTTATGCAATGTATTTATTAGAAACCAAAAAACTTAACAAT
TCTGTTAATTTATTTAAAGATGAACCATTTCCACTAATAGCTGATGTGATAATTGAAAAT
TTAGATGTTGATCCAGTCGAGTCATATTTTATATCGAAAAATTTCTACAAATTTAGTGAA
GAAATTGAAAGAGAATTGCCAAAGCTGACTATTTTGACTTCACATTATTTAGAAAAGGAA
GATGAGGATCTTTTCAAATTTTTAGATTCAAAATGTATTTTAGAACAACTTCCATTTGAA
CGATGGTTTCCTGCAATTTGGAATCCTTTTTTAAATAAACTTTCATTAATCAGAATTTTC
GACAAAGTCGCTTCTGGATCAACTGTAATTGTTGTTTTTGTATTTATAGTCATTTGTTCT
TTTACTCGCTTTCAATTAAAAAGTCATCCTGATGATGTTGTAAAAATTATTGAAGTTTAT
GCTTCTGGTGATGATGAAAGTGAAAAAAGTGAATTAATTGTAAATAAAACTATCGATTTG
TGGCAAAAACATTGCTCCAAAAAATAA
>g16391.t1 Gene=g16391 Length=288
MMEDARNFRSIYYEKVGCRSVEEKKSLEILLKENPVYKQKLFQFLKLFSVPTIHRSLLYC
LALNVYPVYMESKEFVMQQKKEIYSDLLRALNVMKFIDEKTPRARIFYAMYLLETKKLNN
SVNLFKDEPFPLIADVIIENLDVDPVESYFISKNFYKFSEEIERELPKLTILTSHYLEKE
DEDLFKFLDSKCILEQLPFERWFPAIWNPFLNKLSLIRIFDKVASGSTVIVVFVFIVICS
FTRFQLKSHPDDVVKIIEVYASGDDESEKSELIVNKTIDLWQKHCSKK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g16391.t1 | Gene3D | G3DSA:1.10.10.750 | - | 17 | 76 | 8.2E-19 |
| 5 | g16391.t1 | Gene3D | G3DSA:1.10.8.680 | - | 79 | 153 | 3.6E-15 |
| 4 | g16391.t1 | Gene3D | G3DSA:1.10.472.80 | - | 155 | 288 | 2.5E-13 |
| 1 | g16391.t1 | PANTHER | PTHR13530 | TBC1 DOMAIN FAMILY MEMBER 7 | 1 | 287 | 8.0E-68 |
| 6 | g16391.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 222 | - |
| 8 | g16391.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 223 | 244 | - |
| 7 | g16391.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 245 | 288 | - |
| 2 | g16391.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 223 | 245 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K20396 (TBC1 domain family member 7)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
