General information for g16391.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative TBC1 domain family member 7.
Parent gene
- The parent gene g16391 is located on chr_4: 9318868..9320019 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16391 | g16391.t2 | isoform | g16391.t2 | 9318868 | 9320019 |
| chr_4 | g16391 | g16391.t2 | exon | g16391.t2.exon1 | 9318868 | 9319417 |
| chr_4 | g16391 | g16391.t2 | TTS | g16391.t2 | 9318870 | 9318870 |
| chr_4 | g16391 | g16391.t2 | cds | g16391.t2.CDS1 | 9319232 | 9319417 |
| chr_4 | g16391 | g16391.t2 | exon | g16391.t2.exon2 | 9319484 | 9319592 |
| chr_4 | g16391 | g16391.t2 | cds | g16391.t2.CDS2 | 9319484 | 9319592 |
| chr_4 | g16391 | g16391.t2 | exon | g16391.t2.exon3 | 9319754 | 9320019 |
| chr_4 | g16391 | g16391.t2 | cds | g16391.t2.CDS3 | 9319754 | 9320019 |
| chr_4 | g16391 | g16391.t2 | TSS | g16391.t2 | 9320079 | 9320079 |
Sequences
>g16391.t2 Gene=g16391 Length=925
ATGATGGAAGACGCAAGAAATTTTAGATCAATTTATTATGAAAAAGTCGGTTGTCGTAGT
GTCGAAGAAAAGAAAAGTTTAGAAATTCTTCTCAAAGAAAATCCAGTTTATAAACAAAAA
CTTTTTCAATTTCTAAAATTATTTTCTGTTCCGACCATTCATCGTTCACTTTTATATTGC
TTAGCTCTTAATGTTTATCCTGTTTATATGGAAAGTAAAGAATTTGTCATGCAGCAGAAG
AAGGAAATTTATAGTGATTTATTAAGAGCATTAAATGTAATGAAATTTATTGATGAAAAA
ACACCAAGAGCGAGAATTTTTTATGCAATGTATTTATTAGAAACCAAAAAACTTAACAAT
TCTGTTAATTTATTTAAAGATGAACCATTTCCACTAATAGCTGATGTGATAATTGAAAAT
TTAGATGTTGATCCAGTCGAGTCATATTTTATATCGAAAAATTTCTACAAATTTAGTGAA
GAAATTGAAAGAGAATTGCCAAAGCTGACTATTTTGACTTCACATTATTTAGAAAAGGAA
GATGAGGATCTTTTCAAGTAAATTTTCTTTAAAATCTAAATTTATAAACATTTAATAATT
TTTTAATTATTTTAGATTTTTAGATTCAAAATGTATTTTAGAACAACTTCCATTTGAACG
ATGGTTTCCTGCAATTTGGAATCCTTTTTTAAATAAACTTTCATTAATCAGAATTTTCGA
CAAAGTCGCTTCTGGATCAACTGTAATTGTTGTTTTTGTATTTATAGTCATTTGTTCTTT
TACTCGCTTTCAATTAAAAAGTCATCCTGATGATGTTGTAAAAATTATTGAAGTTTATGC
TTCTGGTGATGATGAAAGTGAAAAAAGTGAATTAATTGTAAATAAAACTATCGATTTGTG
GCAAAAACATTGCTCCAAAAAATAA
>g16391.t2 Gene=g16391 Length=186
MMEDARNFRSIYYEKVGCRSVEEKKSLEILLKENPVYKQKLFQFLKLFSVPTIHRSLLYC
LALNVYPVYMESKEFVMQQKKEIYSDLLRALNVMKFIDEKTPRARIFYAMYLLETKKLNN
SVNLFKDEPFPLIADVIIENLDVDPVESYFISKNFYKFSEEIERELPKLTILTSHYLEKE
DEDLFK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g16391.t2 | Gene3D | G3DSA:1.10.10.750 | - | 17 | 76 | 0 |
| 3 | g16391.t2 | Gene3D | G3DSA:1.10.8.680 | - | 79 | 153 | 0 |
| 1 | g16391.t2 | PANTHER | PTHR13530 | TBC1 DOMAIN FAMILY MEMBER 7 | 1 | 185 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed