General information for g16396.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16396 is located on chr_4: 9331017..9337367 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16396 | g16396.t1 | isoform | g16396.t1 | 9331017 | 9331643 |
| chr_4 | g16396 | g16396.t1 | exon | g16396.t1.exon1 | 9331017 | 9331082 |
| chr_4 | g16396 | g16396.t1 | cds | g16396.t1.CDS1 | 9331017 | 9331082 |
| chr_4 | g16396 | g16396.t1 | exon | g16396.t1.exon2 | 9331142 | 9331236 |
| chr_4 | g16396 | g16396.t1 | cds | g16396.t1.CDS2 | 9331142 | 9331236 |
| chr_4 | g16396 | g16396.t1 | exon | g16396.t1.exon3 | 9331358 | 9331481 |
| chr_4 | g16396 | g16396.t1 | cds | g16396.t1.CDS3 | 9331358 | 9331481 |
| chr_4 | g16396 | g16396.t1 | exon | g16396.t1.exon4 | 9331539 | 9331643 |
| chr_4 | g16396 | g16396.t1 | cds | g16396.t1.CDS4 | 9331539 | 9331643 |
| chr_4 | g16396 | g16396.t1 | TTS | g16396.t1 | 9332053 | 9332053 |
| chr_4 | g16396 | g16396.t1 | TSS | g16396.t1 | NA | NA |
Sequences
>g16396.t1 Gene=g16396 Length=390
ATGCAATTCGGTACTGGCACTGGTCTCTGCGGTGGTTCAGTCTTGACAATCCGTTCAGTT
TTGACCGCTGCTCATTGTCCAATTGGTTCAAGCTCAACCTTGGTCATTGCTGGTGCTCAC
AACAGAAAATTGTCGTTGAACCAAATCAACAACGTCGTACTATATCGCTATCCTCATCCA
CCAACACCAAACTTTGCCTTCGGTGCACATGTTCAAGCCGCTCGTATGCCAACTGCTTTT
GCTAGTGAACTTTTCGTCGGTGAAACTGCCCGCTCAACTGGATGGGGAAGAACAACTAAC
ACTGGTGCAACATCAGCTGTCCTTCGAAGGCTTACAATCCAGTCATTACTAACGCTGCTT
GCTCAGCTGTCTATGGTGGATCAGTTGTAA
>g16396.t1 Gene=g16396 Length=129
MQFGTGTGLCGGSVLTIRSVLTAAHCPIGSSSTLVIAGAHNRKLSLNQINNVVLYRYPHP
PTPNFAFGAHVQAARMPTAFASELFVGETARSTGWGRTTNTGATSAVLRRLTIQSLLTLL
AQLSMVDQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16396.t1 | Gene3D | G3DSA:2.40.10.10 | - | 10 | 119 | 1.1E-10 |
| 2 | g16396.t1 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 3 | 45 | 7.0E-13 |
| 3 | g16396.t1 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 3 | 45 | 7.0E-13 |
| 1 | g16396.t1 | Pfam | PF00089 | Trypsin | 2 | 114 | 4.2E-10 |
| 5 | g16396.t1 | ProSitePatterns | PS00134 | Serine proteases, trypsin family, histidine active site. | 21 | 26 | - |
| 4 | g16396.t1 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 4 | 114 | 3.83E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed