Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16397 g16397.t19 isoform g16397.t19 9336128 9337367
chr_4 g16397 g16397.t19 exon g16397.t19.exon1 9336128 9336380
chr_4 g16397 g16397.t19 TTS g16397.t19 9336138 9336138
chr_4 g16397 g16397.t19 exon g16397.t19.exon2 9336435 9336589
chr_4 g16397 g16397.t19 exon g16397.t19.exon3 9336649 9336776
chr_4 g16397 g16397.t19 exon g16397.t19.exon4 9336840 9336964
chr_4 g16397 g16397.t19 cds g16397.t19.CDS1 9336920 9336964
chr_4 g16397 g16397.t19 exon g16397.t19.exon5 9337059 9337367
chr_4 g16397 g16397.t19 cds g16397.t19.CDS2 9337059 9337367
chr_4 g16397 g16397.t19 TSS g16397.t19 9337406 9337406

Sequences

>g16397.t19 Gene=g16397 Length=970
ATGAAACTTTTCCTTCTCGCGATCCTCGCCGTTGGCGCTCTTGCCCAGGAGAACTATGAG
GGCCCAGAGTACGCTCCAATTGATCCATCATCAATCATTCCTGTTCAGGAAATGCCCGGT
TTCTGGGATGACAAGACCGAATTCCCAGCATGGATGAAGTCACCAGTCAATGTCCGTGAT
CGTCGTATTGTCGGTGGTGTTGAAGTTGTTCCACACAGCCATCCATACCAAGTTGCCCTT
CACATTCAATTCGGTGGTGGTACTGGTCTCTGCGGTGGTTCAGTTTTGACAATCCGTTCA
GTTTTGACTCTCAACCTTGGTCATTGCTGGTGCTCACAACAGAAATGTCGTTGAAGCCAA
TCAACAACGTCGTACTGTTCCATCATCAGGCTACCGCATCCACGCCAACTACAATCCATC
AAACTTGAACAATGATATTGCTGTTCTCATCACACCAACACCAAACTTTGCATGGACCAC
AGCTGTTCAACCAACACGTCGTCCAACTGGTGCTCAACTTAGCGATCTTTTCGTTGGAGA
TAGATCACGTGCAACTGGCTGGGGTCGTGTTACCAACACTGGTGCAACATCAGCTGTCCT
CCGTAAGGCTTACAATACAATCATCACTAATGCTGCTTGCGCTCAAGTTTATGGAACAAG
CGTCGTAAATGCTGGAGTTATTTGCAAGGAAACAGCTCAATCAAATCAAGGAACATGCAA
CGGAGATTCAGGCGGTGTGCTTTCAGTTGAACGTCCTGGACACGCTCAATGGGTCCAAGT
TGGTGTTACCTCATTTGGTGCTGCTGCTGGTTGTGTTGCTGGATTCCCATCAGGCTTCGC
TCGTATGACTCATTTCGATGCATGGATTAATGCCAACCAAAATCCATAAAAAGTGAACAT
TCATTTTTAAATGGAATGAAGATCAAAAAAAAAATTGTTAAATTAAATTCGAAATTTTTG
CAAAACAAAA

>g16397.t19 Gene=g16397 Length=117
MKLFLLAILAVGALAQENYEGPEYAPIDPSSIIPVQEMPGFWDDKTEFPAWMKSPVNVRD
RRIVGGVEVVPHSHPYQVALHIQFGGGTGLCGGSVLTIRSVLTLNLGHCWCSQQKCR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
4 g16397.t19 Gene3D G3DSA:2.40.10.10 - 63 110 4.7E-8
1 g16397.t19 Pfam PF00089 Trypsin 63 112 4.8E-5
6 g16397.t19 Phobius SIGNAL_PEPTIDE Signal peptide region 1 15 -
7 g16397.t19 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
8 g16397.t19 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 11 -
9 g16397.t19 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 12 15 -
5 g16397.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 16 117 -
2 g16397.t19 SUPERFAMILY SSF50494 Trypsin-like serine proteases 54 112 2.01E-11
3 g16397.t19 SignalP_EUK SignalP-noTM SignalP-noTM 1 15 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed