General information for g16397.t60
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16397 is located on chr_4: 9336657..9342138 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16397 | g16397.t60 | TTS | g16397.t60 | 9336138 | 9336138 |
| chr_4 | g16397 | g16397.t60 | isoform | g16397.t60 | 9336209 | 9337367 |
| chr_4 | g16397 | g16397.t60 | exon | g16397.t60.exon1 | 9336209 | 9336380 |
| chr_4 | g16397 | g16397.t60 | cds | g16397.t60.CDS1 | 9336209 | 9336380 |
| chr_4 | g16397 | g16397.t60 | exon | g16397.t60.exon2 | 9336488 | 9336589 |
| chr_4 | g16397 | g16397.t60 | cds | g16397.t60.CDS2 | 9336488 | 9336589 |
| chr_4 | g16397 | g16397.t60 | exon | g16397.t60.exon3 | 9336649 | 9336776 |
| chr_4 | g16397 | g16397.t60 | cds | g16397.t60.CDS3 | 9336649 | 9336776 |
| chr_4 | g16397 | g16397.t60 | exon | g16397.t60.exon4 | 9336840 | 9337011 |
| chr_4 | g16397 | g16397.t60 | cds | g16397.t60.CDS4 | 9336840 | 9336842 |
| chr_4 | g16397 | g16397.t60 | exon | g16397.t60.exon5 | 9337112 | 9337367 |
| chr_4 | g16397 | g16397.t60 | TSS | g16397.t60 | 9337406 | 9337406 |
Sequences
>g16397.t60 Gene=g16397 Length=830
ATGAAACTTTTCCTTCTCGCGATCCTCGCCGTTGGCGCTCTTGCCCAGGAGAACTATGAG
GGCCCAGAGTACGCTCCAATTGATCCATCATCAATCATTCCTGTTCAGGAAATGCCCGGT
TTCTGGGATGACAAGACCGAATTCCCAGCATGGATGAAGTCACCAGTCAATGTCCGTGAT
CGTCGTATTGTCGGTGGTGTTGAAGTTGTTCCACACAGCCATCCATACCAAGTTGCCCTT
CACATTCAATTCGGTGTGAAATAACTTTGTAATTTAGGCTGCTCATTGTCCAATTGGTTC
AAGCTCAACCTTGGTCATTGCTGGTGCTCACAACAGAAATGTCGTTGAAGCCAATCAACA
ACGTCGTACTGTTCCATCATCAGGCTACCGCATCCACGCCAACTACAATCCATCAAACTT
GAACAATGATATTGCTGTTCTCATCACACCAACACCAAACTTTGCATGGACCACAGCTGT
TCAACCAACACGTCGTCCAACTGGTGCTCAACTTAGCGATCTTTTCGTTGGAGATAGATC
ACGTGCAACTGGCTGGGGTCGTGTTACCAACACTGGTGCAACATCAGCTGTCCTCCGTAA
GGCTTACAATACAATCATCACTAATGCTGCTTGCGCTCAAGTTTATGGAACAAGCGTCCA
ACGGAGATTCAGGCGGTGTGCTTTCAGTTGAACGTCCTGGACACGCTCAATGGGTCCAAG
TTGGTGTTACCTCATTTGGTGCTGCTGCTGGTTGTGTTGCTGGATTCCCATCAGGCTTCG
CTCGTATGACTCATTTCGATGCATGGATTAATGCCAACCAAAATCCATAA
>g16397.t60 Gene=g16397 Length=134
MILLFSSHQHQTLHGPQLFNQHVVQLVLNLAIFSLEIDHVQLAGVVLPTLVQHQLSSVRL
TIQSSLMLLALKFMEQASNGDSGGVLSVERPGHAQWVQVGVTSFGAAAGCVAGFPSGFAR
MTHFDAWINANQNP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16397.t60 | Gene3D | G3DSA:2.40.10.10 | - | 41 | 133 | 0.0e+00 |
| 2 | g16397.t60 | PANTHER | PTHR24250:SF56 | SERINE PROTEASE P96 | 75 | 130 | 0.0e+00 |
| 3 | g16397.t60 | PANTHER | PTHR24250 | CHYMOTRYPSIN-RELATED | 75 | 130 | 0.0e+00 |
| 1 | g16397.t60 | Pfam | PF00089 | Trypsin | 73 | 128 | 7.9e-05 |
| 4 | g16397.t60 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 62 | 131 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed