General information for g16398.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16398 is located on chr_4: 9341613..9346552 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16398 | g16398.t17 | TSS | g16398.t17 | 9340829 | 9340829 |
| chr_4 | g16398 | g16398.t17 | isoform | g16398.t17 | 9340865 | 9342001 |
| chr_4 | g16398 | g16398.t17 | exon | g16398.t17.exon1 | 9340865 | 9341153 |
| chr_4 | g16398 | g16398.t17 | exon | g16398.t17.exon2 | 9341214 | 9341364 |
| chr_4 | g16398 | g16398.t17 | exon | g16398.t17.exon3 | 9341430 | 9341554 |
| chr_4 | g16398 | g16398.t17 | cds | g16398.t17.CDS1 | 9341495 | 9341554 |
| chr_4 | g16398 | g16398.t17 | exon | g16398.t17.exon4 | 9341613 | 9341767 |
| chr_4 | g16398 | g16398.t17 | cds | g16398.t17.CDS2 | 9341613 | 9341767 |
| chr_4 | g16398 | g16398.t17 | exon | g16398.t17.exon5 | 9341844 | 9342001 |
| chr_4 | g16398 | g16398.t17 | cds | g16398.t17.CDS3 | 9341844 | 9341982 |
| chr_4 | g16398 | g16398.t17 | TTS | g16398.t17 | 9342130 | 9342130 |
Sequences
>g16398.t17 Gene=g16398 Length=878
ATGAAACTCTTGCTTCTCGCACTTTTCGCTGCTGTGGCACTTGCCCAGGAAAACTATGAT
GGACCAGAATACGCTCCATTTGATGCCTCAGAAATCATCCCAGTTGAAGATTTCCCAGGT
TTCTGGACAATCGTGAATTCCCAAAAGAAGTTTTCACACCAAATCCACGTGCCTCAAGAA
TTGTCGGTGGTGTTGAAGTTGTTCCACACAGCCATCCATACCAAGTTGCCCTTCACATGC
AATTCGGTACTGGCACTGGTCTCTGCCGGTGGTTCAGTTTCTTTTGACCGCTGCTCATTG
TCCAATTGGTTCAAGCTCAACCTTGGTCATTGCTGGTGCTCACAACAGAAATGTCGTTGA
ACCAAATCAACAACGTCGTACTGTTCCATCATCAGGCTACCGCATCCACGCCAACTACAA
CCCATCAAACTTGAACAATGATATCGCTATCCTCATCACACCAACACCAAACTTTGCCTT
CGGTGCACATGTTCAAGCCGCTCGTATGCCAACTGCTTTTGCTAGTGAACTTTTCGTCGG
TGAAACTGCCCGCTCAACTGGATGGGGAAGAACAACTAACACTGGTGCAACCTCAGCTGT
CCTTCGTAAGGCTTACAATCCAGTCATTACTAATGCTGCTTGCTCAGCTGTCTATGGTGG
ATCAGTTGTAATTGCTTCAGTCATTTGCATTGCTACAAGCGGTGTCAACCAAGGAACATG
GCGGTGTCCTTTCAGTTCCAAGAGCTGGAGATACTCGTCCAATCCAAATTGGTGTTACAT
CATTCGTCGCTGCAGCTGGTTGCGTTGCTGGATTCCCATCAGGCTTCGCAAGAGTTACAT
CATTCCTTACCTGGATTAACAACAACCAAAATCCATAA
>g16398.t17 Gene=g16398 Length=117
MPTAFASELFVGETARSTGWGRTTNTGATSAVLRKAYNPVITNAACSAVYGGSVVIASVI
CIATSGVNQGTWRCPFSSKSWRYSSNPNWCYIIRRCSWLRCWIPIRLRKSYIIPYLD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g16398.t17 | Gene3D | G3DSA:2.40.10.10 | - | 1 | 78 | 0.0e+00 |
| 1 | g16398.t17 | Pfam | PF00089 | Trypsin | 8 | 66 | 5.3e-06 |
| 2 | g16398.t17 | SUPERFAMILY | SSF50494 | Trypsin-like serine proteases | 9 | 71 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004252 | serine-type endopeptidase activity | MF |
| GO:0006508 | proteolysis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed