Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16398 g16398.t28 TSS g16398.t28 9340829 9340829
chr_4 g16398 g16398.t28 isoform g16398.t28 9340865 9342001
chr_4 g16398 g16398.t28 exon g16398.t28.exon1 9340865 9341153
chr_4 g16398 g16398.t28 exon g16398.t28.exon2 9341214 9341364
chr_4 g16398 g16398.t28 exon g16398.t28.exon3 9341430 9341554
chr_4 g16398 g16398.t28 cds g16398.t28.CDS1 9341551 9341554
chr_4 g16398 g16398.t28 exon g16398.t28.exon4 9341644 9341767
chr_4 g16398 g16398.t28 cds g16398.t28.CDS2 9341644 9341767
chr_4 g16398 g16398.t28 exon g16398.t28.exon5 9341830 9342001
chr_4 g16398 g16398.t28 cds g16398.t28.CDS3 9341830 9342001
chr_4 g16398 g16398.t28 TTS g16398.t28 9342130 9342130

Sequences

>g16398.t28 Gene=g16398 Length=861
ATGAAACTCTTGCTTCTCGCACTTTTCGCTGCTGTGGCACTTGCCCAGGAAAACTATGAT
GGACCAGAATACGCTCCATTTGATGCCTCAGAAATCATCCCAGTTGAAGATTTCCCAGGT
TTCTGGACAATCGTGAATTCCCAAAAGAAGTTTTCACACCAAATCCACGTGCCTCAAGAA
TTGTCGGTGGTGTTGAAGTTGTTCCACACAGCCATCCATACCAAGTTGCCCTTCACATGC
AATTCGGTACTGGCACTGGTCTCTGCCGGTGGTTCAGTTTCTTTTGACCGCTGCTCATTG
TCCAATTGGTTCAAGCTCAACCTTGGTCATTGCTGGTGCTCACAACAGAAATGTCGTTGA
ACCAAATCAACAACGTCGTACTGTTCCATCATCAGGCTACCGCATCCACGCCAACTACAA
CCCATCAAACTTGAACAATGATATCGCTATCCTCATCACACCAACACCAAACTTTGCCTT
CGGTGCACATGTTCAAGCCGCTCGTATGCCAACTGCTTTTGCTAGTGAACTTTTCGTCGG
TGAAACTGCCCGCTCAACTGGATGGCTGTCCTTCGTAAGGCTTACAATCCAGTCATTACT
AATGCTGCTTGCTCAGCTGTCTATGGTGGATCAGTTGTAATTGCTTCAGTCATTTGCATT
GCTACAAGCGGTGTCAACCAAGGAACATGCAACGGTGACTCAGGCGGTGTCCTTTCAGTT
CCAAGAGCTGGAGATACTCGTCCAATCCAAATTGGTGTTACATCATTCGTCGCTGCAGCT
GGTTGCGTTGCTGGATTCCCATCAGGCTTCGCAAGAGTTACATCATTCCTTACCTGGATT
AACAACAACCAAAATCCATAA

>g16398.t28 Gene=g16398 Length=99
MAVLRKAYNPVITNAACSAVYGGSVVIASVICIATSGVNQGTCNGDSGGVLSVPRAGDTR
PIQIGVTSFVAAAGCVAGFPSGFARVTSFLTWINNNQNP

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g16398.t28 Gene3D G3DSA:2.40.10.10 - 1 89 1.4E-20
2 g16398.t28 PANTHER PTHR24250:SF56 SERINE PROTEASE P96 2 96 8.0E-27
3 g16398.t28 PANTHER PTHR24250 CHYMOTRYPSIN-RELATED 2 96 8.0E-27
1 g16398.t28 Pfam PF00089 Trypsin 3 93 3.2E-12
7 g16398.t28 ProSitePatterns PS00135 Serine proteases, trypsin family, serine active site. 41 52 -
9 g16398.t28 ProSiteProfiles PS50240 Serine proteases, trypsin domain profile. 1 98 10.286
6 g16398.t28 SUPERFAMILY SSF50494 Trypsin-like serine proteases 3 97 1.34E-21
4 g16398.t28 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 20 42 -
5 g16398.t28 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 62 84 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004252 serine-type endopeptidase activity MF
GO:0006508 proteolysis BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed