General information for g1640.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein BUD31-like protein.
Parent gene
- The parent gene g1640 is located on chr_3: 12271018..12271799 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1640 | g1640.t1 | TSS | g1640.t1 | 12270481 | 12270481 |
| chr_3 | g1640 | g1640.t1 | isoform | g1640.t1 | 12270531 | 12271018 |
| chr_3 | g1640 | g1640.t1 | exon | g1640.t1.exon1 | 12270531 | 12270624 |
| chr_3 | g1640 | g1640.t1 | cds | g1640.t1.CDS1 | 12270531 | 12270624 |
| chr_3 | g1640 | g1640.t1 | exon | g1640.t1.exon2 | 12270684 | 12271018 |
| chr_3 | g1640 | g1640.t1 | cds | g1640.t1.CDS2 | 12270684 | 12271018 |
| chr_3 | g1640 | g1640.t1 | TTS | g1640.t1 | 12271128 | 12271128 |
Sequences
>g1640.t1 Gene=g1640 Length=429
ATGCCGAAAGTAAGGAGAAGCAAAAAAAGGCCACCAGAAGGATGGGATTTAATCGAAGAA
ACTCTTGAAAGTATGGAACAAAAGATGAGAGAAGCTGAAACTGAGCCACATGAAGGAAAG
AGAATAAATGAATCACTCTGGCCTATCTTTAAAATACACCATCAAAAGACTCGCTATATC
TATGACATGTATTATCGGCGTAAAATCATCTCACGGGAACTTTATGATTACTGTTTGAAA
GAGAGGATCGCTGACGCTAATTTAATTGCAAAATGGAAGAAACCGGGCTATGAAAATCTC
TGCTGTCTCAGATGCATACAGACTCGTGACACAAATTTCGGAACAAACTGCATTTGTCGA
GTACCAAAATCAAAACTCGAAGAAGGAAAAATTGTCGAATGTGTTCACTGTGGTTGTCGT
GGATGCTAA
>g1640.t1 Gene=g1640 Length=142
MPKVRRSKKRPPEGWDLIEETLESMEQKMREAETEPHEGKRINESLWPIFKIHHQKTRYI
YDMYYRRKIISRELYDYCLKERIADANLIAKWKKPGYENLCCLRCIQTRDTNFGTNCICR
VPKSKLEEGKIVECVHCGCRGC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g1640.t1 | Coils | Coil | Coil | 15 | 35 | - |
| 2 | g1640.t1 | PANTHER | PTHR19411 | PROTEIN BUD31-RELATED | 1 | 142 | 1.4E-72 |
| 3 | g1640.t1 | PANTHER | PTHR19411:SF0 | PROTEIN BUD31 HOMOLOG | 1 | 142 | 1.4E-72 |
| 7 | g1640.t1 | PRINTS | PR00322 | G10 protein signature | 12 | 32 | 2.7E-56 |
| 5 | g1640.t1 | PRINTS | PR00322 | G10 protein signature | 47 | 70 | 2.7E-56 |
| 8 | g1640.t1 | PRINTS | PR00322 | G10 protein signature | 71 | 96 | 2.7E-56 |
| 4 | g1640.t1 | PRINTS | PR00322 | G10 protein signature | 97 | 122 | 2.7E-56 |
| 6 | g1640.t1 | PRINTS | PR00322 | G10 protein signature | 134 | 142 | 2.7E-56 |
| 1 | g1640.t1 | Pfam | PF01125 | G10 protein | 1 | 142 | 5.6E-66 |
| 9 | g1640.t1 | ProSitePatterns | PS00997 | G10 protein signature 1. | 100 | 122 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
KEGG
Orthology
- This transcript has been annotated with K12873 (bud site selection protein 31)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
