General information for g1640.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein BUD31-like protein.
Parent gene
- The parent gene g1640 is located on chr_3: 12271018..12271799 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g1640 | g1640.t3 | TSS | g1640.t3 | 12270481 | 12270481 |
| chr_3 | g1640 | g1640.t3 | isoform | g1640.t3 | 12270531 | 12271018 |
| chr_3 | g1640 | g1640.t3 | exon | g1640.t3.exon1 | 12270531 | 12270624 |
| chr_3 | g1640 | g1640.t3 | cds | g1640.t3.CDS1 | 12270531 | 12270624 |
| chr_3 | g1640 | g1640.t3 | exon | g1640.t3.exon2 | 12270684 | 12270777 |
| chr_3 | g1640 | g1640.t3 | cds | g1640.t3.CDS2 | 12270684 | 12270777 |
| chr_3 | g1640 | g1640.t3 | exon | g1640.t3.exon3 | 12270892 | 12271018 |
| chr_3 | g1640 | g1640.t3 | cds | g1640.t3.CDS3 | 12270892 | 12271018 |
| chr_3 | g1640 | g1640.t3 | TTS | g1640.t3 | 12271128 | 12271128 |
Sequences
>g1640.t3 Gene=g1640 Length=315
ATGCCGAAAGTAAGGAGAAGCAAAAAAAGGCCACCAGAAGGATGGGATTTAATCGAAGAA
ACTCTTGAAAGTATGGAACAAAAGATGAGAGAAGCTGAAACTGAGCCACATGAAGGAAAG
AGAATAAATGAATCACTCTGGCCTATCTTTAAAATACACCATCAAAAGACTCGCTATATC
TATGACATCTGTCTCAGATGCATACAGACTCGTGACACAAATTTCGGAACAAACTGCATT
TGTCGAGTACCAAAATCAAAACTCGAAGAAGGAAAAATTGTCGAATGTGTTCACTGTGGT
TGTCGTGGATGCTAA
>g1640.t3 Gene=g1640 Length=104
MPKVRRSKKRPPEGWDLIEETLESMEQKMREAETEPHEGKRINESLWPIFKIHHQKTRYI
YDICLRCIQTRDTNFGTNCICRVPKSKLEEGKIVECVHCGCRGC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g1640.t3 | Coils | Coil | Coil | 15 | 35 | - |
| 4 | g1640.t3 | PANTHER | PTHR19411 | PROTEIN BUD31-RELATED | 1 | 62 | 1.1E-38 |
| 6 | g1640.t3 | PANTHER | PTHR19411:SF0 | PROTEIN BUD31 HOMOLOG | 1 | 62 | 1.1E-38 |
| 3 | g1640.t3 | PANTHER | PTHR19411 | PROTEIN BUD31-RELATED | 63 | 104 | 1.1E-38 |
| 5 | g1640.t3 | PANTHER | PTHR19411:SF0 | PROTEIN BUD31 HOMOLOG | 63 | 104 | 1.1E-38 |
| 8 | g1640.t3 | PRINTS | PR00322 | G10 protein signature | 12 | 32 | 4.6E-15 |
| 7 | g1640.t3 | PRINTS | PR00322 | G10 protein signature | 47 | 70 | 4.6E-15 |
| 1 | g1640.t3 | Pfam | PF01125 | G10 protein | 1 | 65 | 1.3E-20 |
| 2 | g1640.t3 | Pfam | PF01125 | G10 protein | 64 | 104 | 1.7E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005634 | nucleus | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed