Gene loci information

Transcript annotation

  • This transcript has been annotated as Moesin/ezrin/radixin homolog 2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16413 g16413.t1 TSS g16413.t1 9372439 9372439
chr_4 g16413 g16413.t1 isoform g16413.t1 9372560 9374782
chr_4 g16413 g16413.t1 exon g16413.t1.exon1 9372560 9372562
chr_4 g16413 g16413.t1 cds g16413.t1.CDS1 9372560 9372562
chr_4 g16413 g16413.t1 exon g16413.t1.exon2 9372626 9373000
chr_4 g16413 g16413.t1 cds g16413.t1.CDS2 9372626 9373000
chr_4 g16413 g16413.t1 exon g16413.t1.exon3 9373077 9373314
chr_4 g16413 g16413.t1 cds g16413.t1.CDS3 9373077 9373314
chr_4 g16413 g16413.t1 exon g16413.t1.exon4 9373438 9373623
chr_4 g16413 g16413.t1 cds g16413.t1.CDS4 9373438 9373623
chr_4 g16413 g16413.t1 exon g16413.t1.exon5 9373717 9374000
chr_4 g16413 g16413.t1 cds g16413.t1.CDS5 9373717 9374000
chr_4 g16413 g16413.t1 exon g16413.t1.exon6 9374057 9374782
chr_4 g16413 g16413.t1 cds g16413.t1.CDS6 9374057 9374782
chr_4 g16413 g16413.t1 TTS g16413.t1 9375196 9375196

Sequences

>g16413.t1 Gene=g16413 Length=1812
ATGATTCCATTTAGGAAGAAAAAAATTAAAAGTTTTCCAGTTCGTGTTTGTAGTCTTGAT
TCGCAATTGGAATTTAATTTGGAGCTAAGCTCAACTGGTGCAGAATTATTTGAACAAGTT
TGCAGAGCATTTGGTTTGAGAGAAGAATGGTATTTTGGTTTACAATATGAAGATACTCGA
GGTAACATTTGCTGGTTAAAAAAAGAGAAAAAAGTTGTCGATCAAAACATCATCAAAGAA
TCATGTGTGTTTATGTTTTACGCAAAGTACTTTCCAGAAAATGTACAAGAAGAACTTGTG
CAGGAAATCACTCAGCATTTGTTTTTTCTGCAAATTAAGCAAGCTATTTTGTCGATGGAA
TATTATTGTCCACCTGAAGCTTCCGTTCTTTTAGCATCATATTATGTACAAGCAAAATAT
GGTGATTATGATGAATTAAATGGCACTGAACTTCTCAATGAAGATCTTTTACCACAACGC
GTAATTGATCAATACAGCATGACACCGGAAATGTGGTTTGAACGTATTAAAACTTGGTAT
GCTGATCATAAAGGAATGTCAAGAGATGAGGCTGAAATGGAATATTTAAAAATTGCTCAA
GATTTGGATATGTTTGGCGTGAATTATTTTCCCATTACAAATAAAAAGAATTCAGAACTC
TGGCTTGGAATTACAGCACTGGGATTGAATATTTATGAAAAAGAAAATAAATTACAACCT
CGAACTGTTTTTCAATGGAGTGAAATTAAAAATATTAGCTTTGATGACAAAAAATTTACA
ATTAAACCAATTGATAAATCTGCTCCAAATTTCATTTTTTACTCAATGAAGCTTCGCATG
AACAAATTAATTCTTGACCTTTGCATTGGCAATCATGAATTATTCATGCGTCGACGAAAA
CCAGACACTATCGAAATTCAGCAAATGAAGCAGCAAGCAAAAGAAGAAAAACAACGAAGG
CAAATTGAAAGAAATAAATTAGCAAAAGAGAAGCAATTAAGAGAACAAGCTGAAAGAGAA
AAAGCAATTTTAGAATCAAGACTTTTGCAAATGCAAGAAGAAATGAAAAATGCCAATAAT
GCTTTGAAACGATCAGAAGAAGCAGCAGAACTTTTAGAGCAAAAAAATCGTCTTGCTGAA
GAGGAAGCAATTTTATTAAGTCGAAAAGCACGTGAAATTGAACAAGAAATTGCCAATCTC
AAAAACTATGCATTAAAAACAGAAGAAGAAAAACTTCATCTTGAGCGTAAATCACGTGAA
GCTGAAACTTTGACAGCACGAATGATTGAGGAATCACAAAAGCGAGCATCAGAAGCTGAA
AGACTCAAAAATGAGCTGATAAATGCTCGAATTGCTGAAAAAGAAGCAAAAGAAAAACTT
TTGACTTTCTTATCACGTGCTACACTTGCAGCTTCACCACCTCCAATTATTGCATCAACT
GCTCTCTCCGTTCCTGTTCATCAACTTTTAACTCCTGATGGATTTTTGTCATTATCAACT
CAATCTTTAAGTGACTCTGTACAACTTTATGATGAACCAATTGAAATTAATTCTTATGAA
CTTGGCGAAAATGACACAAATCTTGAAATTGAAATTGAAAAGGAAAGAATTGAATATTTG
GCAAAATCAAAGCAAGTTCAATGTCAATTGAAAGGTTTAAGAAGTGAAATTGAATTATTA
AAAATTAGTGAGTCAGAATTTGATAGAATTAATGCAGAACAATTGCGATTAGGAGAAAAT
AAGTATTCAACATTGAAAAAAGCGATTAAAAGTAGCACAAAACATAAAGTCGCTTTCTAT
GAAGAACTTTAA

>g16413.t1 Gene=g16413 Length=603
MIPFRKKKIKSFPVRVCSLDSQLEFNLELSSTGAELFEQVCRAFGLREEWYFGLQYEDTR
GNICWLKKEKKVVDQNIIKESCVFMFYAKYFPENVQEELVQEITQHLFFLQIKQAILSME
YYCPPEASVLLASYYVQAKYGDYDELNGTELLNEDLLPQRVIDQYSMTPEMWFERIKTWY
ADHKGMSRDEAEMEYLKIAQDLDMFGVNYFPITNKKNSELWLGITALGLNIYEKENKLQP
RTVFQWSEIKNISFDDKKFTIKPIDKSAPNFIFYSMKLRMNKLILDLCIGNHELFMRRRK
PDTIEIQQMKQQAKEEKQRRQIERNKLAKEKQLREQAEREKAILESRLLQMQEEMKNANN
ALKRSEEAAELLEQKNRLAEEEAILLSRKAREIEQEIANLKNYALKTEEEKLHLERKSRE
AETLTARMIEESQKRASEAERLKNELINARIAEKEAKEKLLTFLSRATLAASPPPIIAST
ALSVPVHQLLTPDGFLSLSTQSLSDSVQLYDEPIEINSYELGENDTNLEIEIEKERIEYL
AKSKQVQCQLKGLRSEIELLKISESEFDRINAEQLRLGENKYSTLKKAIKSSTKHKVAFY
EEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
30 g16413.t1 CDD cd14473 FERM_B-lobe 104 202 3.99517E-25
31 g16413.t1 CDD cd13194 FERM_C_ERM 204 300 1.83503E-62
28 g16413.t1 Coils Coil Coil 306 459 -
22 g16413.t1 Gene3D G3DSA:3.10.20.90 - 3 89 2.5E-27
26 g16413.t1 Gene3D G3DSA:1.20.80.60 - 90 156 1.4E-25
27 g16413.t1 Gene3D G3DSA:1.20.80.60 - 164 204 2.3E-6
23 g16413.t1 Gene3D G3DSA:2.30.29.30 - 205 302 1.1E-44
25 g16413.t1 Gene3D G3DSA:1.20.5.450 - 303 470 1.1E-29
24 g16413.t1 Gene3D G3DSA:1.25.40.1020 - 531 602 1.4E-12
35 g16413.t1 MobiDBLite mobidb-lite consensus disorder prediction 315 334 -
5 g16413.t1 PANTHER PTHR23281 MERLIN/MOESIN/EZRIN/RADIXIN 6 602 4.0E-213
29 g16413.t1 PIRSF PIRSF002305 ERM 3 603 4.3E-207
13 g16413.t1 PRINTS PR00661 ERM family signature 24 43 2.4E-48
9 g16413.t1 PRINTS PR00935 Band 4.1 protein family signature 44 56 2.2E-26
11 g16413.t1 PRINTS PR00661 ERM family signature 75 94 2.4E-48
8 g16413.t1 PRINTS PR00935 Band 4.1 protein family signature 110 123 2.2E-26
17 g16413.t1 PRINTS PR00661 ERM family signature 119 140 2.4E-48
7 g16413.t1 PRINTS PR00935 Band 4.1 protein family signature 123 143 2.2E-26
15 g16413.t1 PRINTS PR00661 ERM family signature 163 180 2.4E-48
6 g16413.t1 PRINTS PR00935 Band 4.1 protein family signature 190 206 2.2E-26
10 g16413.t1 PRINTS PR00661 ERM family signature 213 233 2.4E-48
12 g16413.t1 PRINTS PR00661 ERM family signature 288 307 2.4E-48
16 g16413.t1 PRINTS PR00661 ERM family signature 558 579 2.4E-48
14 g16413.t1 PRINTS PR00661 ERM family signature 580 601 2.4E-48
4 g16413.t1 Pfam PF09379 FERM N-terminal domain 20 75 8.1E-14
3 g16413.t1 Pfam PF00373 FERM central domain 98 210 6.9E-21
2 g16413.t1 Pfam PF09380 FERM C-terminal PH-like domain 214 302 1.0E-26
1 g16413.t1 Pfam PF00769 Ezrin/radixin/moesin family 335 603 3.1E-63
34 g16413.t1 ProSitePatterns PS00661 FERM domain signature 2. 180 209 -
36 g16413.t1 ProSiteProfiles PS50057 FERM domain profile. 12 299 73.686
33 g16413.t1 SMART SM00295 B41_5 8 210 1.1E-66
32 g16413.t1 SMART SM01196 FERM_C_3 214 303 1.8E-35
20 g16413.t1 SUPERFAMILY SSF54236 Ubiquitin-like 11 93 1.65E-20
21 g16413.t1 SUPERFAMILY SSF47031 Second domain of FERM 96 202 1.44E-33
18 g16413.t1 SUPERFAMILY SSF50729 PH domain-like 203 341 4.67E-43
19 g16413.t1 SUPERFAMILY SSF48678 Moesin tail domain 519 603 1.02E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005856 cytoskeleton CC
GO:0003779 actin binding MF
GO:0008092 cytoskeletal protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values