General information for g16413.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16413 is located on chr_4: 9373998..9374782 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16413 | g16413.t2 | isoform | g16413.t2 | 9373998 | 9374782 |
| chr_4 | g16413 | g16413.t2 | exon | g16413.t2.exon1 | 9373998 | 9374000 |
| chr_4 | g16413 | g16413.t2 | exon | g16413.t2.exon2 | 9374057 | 9374782 |
| chr_4 | g16413 | g16413.t2 | cds | g16413.t2.CDS1 | 9374252 | 9374782 |
| chr_4 | g16413 | g16413.t2 | TTS | g16413.t2 | 9375196 | 9375196 |
| chr_4 | g16413 | g16413.t2 | TSS | g16413.t2 | NA | NA |
Sequences
>g16413.t2 Gene=g16413 Length=729
TTGAAACGATCAGAAGAAGCAGCAGAACTTTTAGAGCAAAAAAATCGTCTTGCTGAAGAG
GAAGCAATTTTATTAAGTCGAAAAGCACGTGAAATTGAACAAGAAATTGCCAATCTCAAA
AACTATGCATTAAAAACAGAAGAAGAAAAACTTCATCTTGAGCGTAAATCACGTGAAGCT
GAAACTTTGACAGCACGAATGATTGAGGAATCACAAAAGCGAGCATCAGAAGCTGAAAGA
CTCAAAAATGAGCTGATAAATGCTCGAATTGCTGAAAAAGAAGCAAAAGAAAAACTTTTG
ACTTTCTTATCACGTGCTACACTTGCAGCTTCACCACCTCCAATTATTGCATCAACTGCT
CTCTCCGTTCCTGTTCATCAACTTTTAACTCCTGATGGATTTTTGTCATTATCAACTCAA
TCTTTAAGTGACTCTGTACAACTTTATGATGAACCAATTGAAATTAATTCTTATGAACTT
GGCGAAAATGACACAAATCTTGAAATTGAAATTGAAAAGGAAAGAATTGAATATTTGGCA
AAATCAAAGCAAGTTCAATGTCAATTGAAAGGTTTAAGAAGTGAAATTGAATTATTAAAA
ATTAGTGAGTCAGAATTTGATAGAATTAATGCAGAACAATTGCGATTAGGAGAAAATAAG
TATTCAACATTGAAAAAAGCGATTAAAAGTAGCACAAAACATAAAGTCGCTTTCTATGAA
GAACTTTAA
>g16413.t2 Gene=g16413 Length=176
MIEESQKRASEAERLKNELINARIAEKEAKEKLLTFLSRATLAASPPPIIASTALSVPVH
QLLTPDGFLSLSTQSLSDSVQLYDEPIEINSYELGENDTNLEIEIEKERIEYLAKSKQVQ
CQLKGLRSEIELLKISESEFDRINAEQLRLGENKYSTLKKAIKSSTKHKVAFYEEL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16413.t2 | Coils | Coil | Coil | 2 | 32 | - |
| 5 | g16413.t2 | Gene3D | G3DSA:1.25.40.1020 | - | 104 | 175 | 1.6E-13 |
| 2 | g16413.t2 | PANTHER | PTHR23281:SF23 | MERLIN | 1 | 176 | 4.4E-16 |
| 3 | g16413.t2 | PANTHER | PTHR23281 | MERLIN/MOESIN/EZRIN/RADIXIN | 1 | 176 | 4.4E-16 |
| 1 | g16413.t2 | Pfam | PF00769 | Ezrin/radixin/moesin family | 1 | 176 | 7.4E-37 |
| 4 | g16413.t2 | SUPERFAMILY | SSF48678 | Moesin tail domain | 91 | 176 | 9.68E-21 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003779 | actin binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
