General information for g16417.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g16417 is located on chr_4: 9388161..9392232 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16417 | g16417.t3 | isoform | g16417.t3 | 9387321 | 9389300 |
| chr_4 | g16417 | g16417.t3 | exon | g16417.t3.exon1 | 9387321 | 9387440 |
| chr_4 | g16417 | g16417.t3 | exon | g16417.t3.exon2 | 9388119 | 9388489 |
| chr_4 | g16417 | g16417.t3 | cds | g16417.t3.CDS1 | 9388161 | 9388489 |
| chr_4 | g16417 | g16417.t3 | exon | g16417.t3.exon3 | 9388948 | 9389115 |
| chr_4 | g16417 | g16417.t3 | cds | g16417.t3.CDS2 | 9388948 | 9389098 |
| chr_4 | g16417 | g16417.t3 | exon | g16417.t3.exon4 | 9389164 | 9389300 |
| chr_4 | g16417 | g16417.t3 | TSS | g16417.t3 | 9389345 | 9389345 |
| chr_4 | g16417 | g16417.t3 | TTS | g16417.t3 | NA | NA |
Sequences
>g16417.t3 Gene=g16417 Length=796
ATGCCAACCTATAAAGTTAGTTATTTTACGTTTTCAGGCCTTGGTGAGCCAGTTAGATAC
ACAGCGGCTTATTGCAATGTTGATTTTATTGATAATCGTGTGACATGGGAAGAATGGTCA
AAATTAAAATCAAGTAACAACACCACTCGGACAAATGCCAATACTTGAGATTGATGGCAA
AGTATATCATCAATCAATTCCAATTTGTCGCTACCTTGGCAACAAATTTAATCTTACCGG
TGATAATGCAGAAGAAATTTATGAAGTTGATGTTGCTGCTGAAACTGTGAATGAATTACG
TGGAAAAGTTGGAATGTGGGCGTACAGCTGCAAACGTGAAAAGAACGAAAAATATGAAGA
ACTTATCAAAAAGACAATTCCATCTTATCTTAGCAAGCTTGATGAGCAAGCAGGAAAAAA
TGGAGGTTTCTTGGCAATCAAAGATAAAATAACATGGGCTGATTGTTTTGCAACAGGCGT
CTTGGAATATATCAACAGTTTGGTAGATCTTGATGTGCTTGTTGATTATAAAAATTTACA
AAAAGTTCGTGAAAATGTCGTTTCTTCCGAAGGTGTTAAAAAATATTTGAAAAATCGTCC
AGCTGAAGGAGAAAATCCTTTTAAAACTTGGTAGAAAAAATCTTTTGTTTTTATGACTTT
GTTGATGAAATAAAAAAGTTTAAATAAGGAAATGAAAAAAGAATAATTTTTGCAAATAAA
GAATAAGATAAAAAAGTGTCTCATGTGTAGGCCATAAGAAGTAAATTCATGTAGGAATCA
AATGGAATTAAAAAAT
>g16417.t3 Gene=g16417 Length=159
MPILEIDGKVYHQSIPICRYLGNKFNLTGDNAEEIYEVDVAAETVNELRGKVGMWAYSCK
REKNEKYEELIKKTIPSYLSKLDEQAGKNGGFLAIKDKITWADCFATGVLEYINSLVDLD
VLVDYKNLQKVRENVVSSEGVKKYLKNRPAEGENPFKTW
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 10 | g16417.t3 | CDD | cd03192 | GST_C_Sigma_like | 33 | 135 | 0.0000000 |
| 7 | g16417.t3 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 31 | 0.0000059 |
| 6 | g16417.t3 | Gene3D | G3DSA:1.20.1050.10 | - | 32 | 151 | 0.0000000 |
| 2 | g16417.t3 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 1 | 150 | 0.0000000 |
| 3 | g16417.t3 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 1 | 150 | 0.0000000 |
| 1 | g16417.t3 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 48 | 148 | 0.0000000 |
| 9 | g16417.t3 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 29 | 13.0850000 |
| 8 | g16417.t3 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 31 | 156 | 17.4770000 |
| 4 | g16417.t3 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 26 | 0.0000404 |
| 5 | g16417.t3 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 27 | 149 | 0.0000000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed