Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16417 g16417.t8 TTS g16417.t8 9388102 9388102
chr_4 g16417 g16417.t8 isoform g16417.t8 9388161 9389300
chr_4 g16417 g16417.t8 exon g16417.t8.exon1 9388161 9388489
chr_4 g16417 g16417.t8 cds g16417.t8.CDS1 9388161 9388489
chr_4 g16417 g16417.t8 exon g16417.t8.exon2 9389014 9389115
chr_4 g16417 g16417.t8 cds g16417.t8.CDS2 9389014 9389115
chr_4 g16417 g16417.t8 exon g16417.t8.exon3 9389168 9389300
chr_4 g16417 g16417.t8 cds g16417.t8.CDS3 9389168 9389300
chr_4 g16417 g16417.t8 TSS g16417.t8 9389345 9389345

Sequences

>g16417.t8 Gene=g16417 Length=564
ATGCCAACCTATAAAGTTAGTTATTTTACGTTTTCAGGCCTTGGTGAGCCAGTTAGATAC
ACAGCGGCTTATTGCAATGTTGATTTTATTGATAATCGTGTGACATGGGAAGAATGGTCA
AAATTAAAATCAACAACACCACTCGGACAAATGCCAATACTTGAGATTGATGGCAAAGTA
TATCATCAATCAATTCCAATTTGTCGCTACCTTGGCAACAAATTTAATCTTACCGAAGTT
GGAATGTGGGCGTACAGCTGCAAACGTGAAAAGAACGAAAAATATGAAGAACTTATCAAA
AAGACAATTCCATCTTATCTTAGCAAGCTTGATGAGCAAGCAGGAAAAAATGGAGGTTTC
TTGGCAATCAAAGATAAAATAACATGGGCTGATTGTTTTGCAACAGGCGTCTTGGAATAT
ATCAACAGTTTGGTAGATCTTGATGTGCTTGTTGATTATAAAAATTTACAAAAAGTTCGT
GAAAATGTCGTTTCTTCCGAAGGTGTTAAAAAATATTTGAAAAATCGTCCAGCTGAAGGA
GAAAATCCTTTTAAAACTTGGTAG

>g16417.t8 Gene=g16417 Length=187
MPTYKVSYFTFSGLGEPVRYTAAYCNVDFIDNRVTWEEWSKLKSTTPLGQMPILEIDGKV
YHQSIPICRYLGNKFNLTEVGMWAYSCKREKNEKYEELIKKTIPSYLSKLDEQAGKNGGF
LAIKDKITWADCFATGVLEYINSLVDLDVLVDYKNLQKVRENVVSSEGVKKYLKNRPAEG
ENPFKTW

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g16417.t8 CDD cd03039 GST_N_Sigma_like 4 72 0.0000000
13 g16417.t8 CDD cd03192 GST_C_Sigma_like 79 163 0.0000000
10 g16417.t8 Gene3D G3DSA:1.20.1050.130 - 2 79 0.0000000
9 g16417.t8 Gene3D G3DSA:1.20.1050.10 - 80 179 0.0000000
4 g16417.t8 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 80 0.0000000
6 g16417.t8 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 80 0.0000000
3 g16417.t8 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 85 178 0.0000000
5 g16417.t8 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 85 178 0.0000000
1 g16417.t8 Pfam PF02798 Glutathione S-transferase, N-terminal domain 6 72 0.0000027
2 g16417.t8 Pfam PF14497 Glutathione S-transferase, C-terminal domain 82 176 0.0000000
12 g16417.t8 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 24.7300000
11 g16417.t8 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 57 184 14.8840000
7 g16417.t8 SUPERFAMILY SSF52833 Thioredoxin-like 2 76 0.0000000
8 g16417.t8 SUPERFAMILY SSF47616 GST C-terminal domain-like 84 177 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed