General information for g16418.t100
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16418 is located on chr_4: 9392128..9398308 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16418 | g16418.t100 | TTS | g16418.t100 | 9390141 | 9390141 |
| chr_4 | g16418 | g16418.t100 | isoform | g16418.t100 | 9390151 | 9392716 |
| chr_4 | g16418 | g16418.t100 | exon | g16418.t100.exon1 | 9390151 | 9390428 |
| chr_4 | g16418 | g16418.t100 | exon | g16418.t100.exon2 | 9390794 | 9391252 |
| chr_4 | g16418 | g16418.t100 | cds | g16418.t100.CDS1 | 9391077 | 9391252 |
| chr_4 | g16418 | g16418.t100 | exon | g16418.t100.exon3 | 9392547 | 9392716 |
| chr_4 | g16418 | g16418.t100 | cds | g16418.t100.CDS2 | 9392547 | 9392646 |
| chr_4 | g16418 | g16418.t100 | TSS | g16418.t100 | 9392764 | 9392764 |
Sequences
>g16418.t100 Gene=g16418 Length=907
ATGCCAAGTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTT
ATGCTGGCTTATGCAAACGTTGATTTCATCGATAATCGTGTTGAGTGGGAAGATTGGCCA
AAACTTAAGCCAAGTGAATTTGAAAAATCTTTCTTTTTATAACCTTTTTTCTCTTCCACT
TGGCCAACTTCCACTACTTGAGATTGATGGACGAGCATTTCATCATTGCATTCCAATTTG
CCGGTATCTTGGCAGTATTTTTAATCTCACAGGCAGTAACGCAGTGGAAAATTATGAAAT
TGATTGCATAGCGGATACAGTGAATGAATTGCGCTTGAGTGAGTAAACAATTTTTAATTT
GCTTGCAGTCAAGACGATAAAAATGACGGTGTAGTGAAAAAGTAAACAATGAAAGAAAAA
GTGAAGATAAACAAAATGATAACAAAAAACTTGAAAATAATCATTAAAAAATTTTATTTG
AATTTTGATAAGAAAATTGTTTTTTATGAAATTTTTAAAAAATGTTTTTGTTGAAACAAA
AATCAAAATTTTAATAAAATTGATAAGTCATGCAAAACAACAAGTGAAATAAGATTGCAA
GTCAAATAATTTTTTTTGCTAAAATTAAACATAATTAAAAAAGGTTATCAAAATTGAACT
TAAGGACAAGACAACTATGTGAAATCGATTTTAGTCAAAATAACAATTATATGTAAATAT
TAAAAATGTTTAAAAATTGCACTGATAAAAATTGAGAAATATATTTTGAAATTAATTTTA
TTATAATTTAATTCTTGTCAGATTAAGCTACCAGGACTTAATACCATAAAAAGTTTATTT
GGACATTATGTTACTTTTCAATATTTTAATAAAATGGAGCTCACATCTCAAACATAATAA
TGAGCAA
>g16418.t100 Gene=g16418 Length=91
MQTLISSIIVLSGKIGQNLSQVNLKNLSFYNLFSLPLGQLPLLEIDGRAFHHCIPICRYL
GSIFNLTGSNAVENYEIDCIADTVNELRLSE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g16418.t100 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 34 | 64 | 0.0000000 |
| 2 | g16418.t100 | Gene3D | G3DSA:1.20.1050.10 | - | 65 | 88 | 0.0000000 |
| 4 | g16418.t100 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 68 | 10.8920000 |
| 1 | g16418.t100 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 34 | 64 | 0.0000254 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
