Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16418 g16418.t32 isoform g16418.t32 9389362 9392716
chr_4 g16418 g16418.t32 exon g16418.t32.exon1 9389362 9389837
chr_4 g16418 g16418.t32 TTS g16418.t32 9389373 9389373
chr_4 g16418 g16418.t32 cds g16418.t32.CDS1 9389521 9389837
chr_4 g16418 g16418.t32 exon g16418.t32.exon2 9391085 9391252
chr_4 g16418 g16418.t32 cds g16418.t32.CDS2 9391085 9391252
chr_4 g16418 g16418.t32 exon g16418.t32.exon3 9392613 9392716
chr_4 g16418 g16418.t32 cds g16418.t32.CDS3 9392613 9392646
chr_4 g16418 g16418.t32 TSS g16418.t32 9392764 9392764

Sequences

>g16418.t32 Gene=g16418 Length=748
ATGCCAAGTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTT
ATGCTGGCTTATGCAAACGTTGATTTCATCGATAATCGTGTTGACTCTTCCACTTGGCCA
ACTTCCACTACTTGAGATTGATGGACGAGCATTTCATCATTGCATTCCAATTTGCCGGTA
TCTTGGCAGTATTTTTAATCTCACAGGCAGTAACGCAGTGGAAAATTATGAAATTGATTG
CATAGCGGATACAGTGAATGAATTGCGCTTGACAATGTGGTACTACAGTTACAAACGAGT
AAAAAATGAAAAATATGATGAACTTATCAATGATTCAATTCCATATTATCTCGGTAAAAT
AGAAGATCAAGCAGCAACAAAGGATGGATATTTAGCGCTTAAAGGAAAGACAACATGGGC
AGATATTTATGCAGTTGCAATATTTGATTACATACATGACTTAATGGGCTATGATATCGT
AAAGGATTGTAAAAATATCAAAAAAATTCAACAAAAAATTATGTCAGCTGATGGAGTAAA
AAGATATCTAAAAAATCGTCCAGCAGATCAAATCATAACATTTAATTAAAATTTTTAAAA
AGAGAAAAAATTTCAAAAATGTTTTTAGAATTTTGTGATTTCTTTTTAATGTTGTGGTTT
ATTTTTTTAAGTTTCTTTTTTCGTTTTACAAATACAAATAAAAAATTTTTTGTATCAATG
TGTAGAATAAAAAATTCTCATTTTCTCT

>g16418.t32 Gene=g16418 Length=172
MQTLISSIIVLTLPLGQLPLLEIDGRAFHHCIPICRYLGSIFNLTGSNAVENYEIDCIAD
TVNELRLTMWYYSYKRVKNEKYDELINDSIPYYLGKIEDQAATKDGYLALKGKTTWADIY
AVAIFDYIHDLMGYDIVKDCKNIKKIQQKIMSADGVKRYLKNRPADQIITFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16418.t32 CDD cd03192 GST_C_Sigma_like 50 150 2.24289E-16
7 g16418.t32 Gene3D G3DSA:3.40.30.10 Glutaredoxin 12 161 7.0E-35
6 g16418.t32 Gene3D G3DSA:1.20.1050.10 - 43 152 7.0E-35
2 g16418.t32 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 12 166 4.6E-35
3 g16418.t32 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 12 166 4.6E-35
1 g16418.t32 Pfam PF14497 Glutathione S-transferase, C-terminal domain 70 163 2.0E-12
9 g16418.t32 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 46 10.581
8 g16418.t32 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 48 168 14.153
4 g16418.t32 SUPERFAMILY SSF47616 GST C-terminal domain-like 44 165 1.38E-18
5 g16418.t32 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed