General information for g16418.t40
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g16418 is located on chr_4: 9392128..9398308 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16418 | g16418.t40 | TTS | g16418.t40 | 9389373 | 9389373 |
| chr_4 | g16418 | g16418.t40 | isoform | g16418.t40 | 9389376 | 9392666 |
| chr_4 | g16418 | g16418.t40 | exon | g16418.t40.exon1 | 9389376 | 9389747 |
| chr_4 | g16418 | g16418.t40 | cds | g16418.t40.CDS1 | 9389715 | 9389747 |
| chr_4 | g16418 | g16418.t40 | exon | g16418.t40.exon2 | 9389812 | 9389843 |
| chr_4 | g16418 | g16418.t40 | cds | g16418.t40.CDS2 | 9389812 | 9389843 |
| chr_4 | g16418 | g16418.t40 | exon | g16418.t40.exon3 | 9391085 | 9391252 |
| chr_4 | g16418 | g16418.t40 | cds | g16418.t40.CDS3 | 9391085 | 9391252 |
| chr_4 | g16418 | g16418.t40 | exon | g16418.t40.exon4 | 9392584 | 9392666 |
| chr_4 | g16418 | g16418.t40 | cds | g16418.t40.CDS4 | 9392584 | 9392656 |
| chr_4 | g16418 | g16418.t40 | TSS | g16418.t40 | 9392764 | 9392764 |
Sequences
>g16418.t40 Gene=g16418 Length=655
AGTTCGATTTATGCTGGCTTATGCAAACGTTGATTTCATCGATAATCGTGTTGAGTGGGA
AGATTGGCCAAAACTTAAGCCAACTCTTCCACTTGGCCAACTTCCACTACTTGAGATTGA
TGGACGAGCATTTCATCATTGCATTCCAATTTGCCGGTATCTTGGCAGTATTTTTAATCT
CACAGGCAGTAACGCAGTGGAAAATTATGAAATTGATTGCATAGCGGATACAGTGAATGA
ATTGCGCTTGAAAATAGCAATGTGGTACTACAGTTACAAACGAAAGATCAAGCAGCAACA
AAGGATGGATATTTAGCGCTTAAAGGAAAGACAACATGGGCAGATATTTATGCAGTTGCA
ATATTTGATTACATACATGACTTAATGGGCTATGATATCGTAAAGGATTGTAAAAATATC
AAAAAAATTCAACAAAAAATTATGTCAGCTGATGGAGTAAAAAGATATCTAAAAAATCGT
CCAGCAGATCAAATCATAACATTTAATTAAAATTTTTAAAAAGAGAAAAAATTTCAAAAA
TGTTTTTAGAATTTTGTGATTTCTTTTTAATGTTGTGGTTTATTTTTTTAAGTTTCTTTT
TTCGTTTTACAAATACAAATAAAAAATTTTTTGTATCAATGTGTAGAATAAAAAA
>g16418.t40 Gene=g16418 Length=101
MLAYANVDFIDNRVEWEDWPKLKPTLPLGQLPLLEIDGRAFHHCIPICRYLGSIFNLTGS
NAVENYEIDCIADTVNELRLKIAMWYYSYKRKIKQQQRMDI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g16418.t40 | CDD | cd03039 | GST_N_Sigma_like | 1 | 52 | 0.000 |
| 4 | g16418.t40 | Gene3D | G3DSA:1.20.1050.130 | - | 1 | 101 | 0.000 |
| 1 | g16418.t40 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 1 | 97 | 0.000 |
| 2 | g16418.t40 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 1 | 97 | 0.000 |
| 5 | g16418.t40 | ProSiteProfiles | PS50404 | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 59 | 17.143 |
| 3 | g16418.t40 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 1 | 55 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006749 | glutathione metabolic process | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
