Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16418 g16418.t51 TTS g16418.t51 9389373 9389373
chr_4 g16418 g16418.t51 isoform g16418.t51 9389383 9392716
chr_4 g16418 g16418.t51 exon g16418.t51.exon1 9389383 9389821
chr_4 g16418 g16418.t51 cds g16418.t51.CDS1 9389521 9389821
chr_4 g16418 g16418.t51 exon g16418.t51.exon2 9391081 9391252
chr_4 g16418 g16418.t51 cds g16418.t51.CDS2 9391081 9391252
chr_4 g16418 g16418.t51 exon g16418.t51.exon3 9392613 9392716
chr_4 g16418 g16418.t51 cds g16418.t51.CDS3 9392613 9392646
chr_4 g16418 g16418.t51 TSS g16418.t51 9392764 9392764

Sequences

>g16418.t51 Gene=g16418 Length=715
ATGCCAAGTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTT
ATGCTGGCTTATGCAAACGTTGATTTCATCGATAATCGTGTTGACTCTTCCACTTGGCCA
ACTTCCACTACTTGAGATTGATGGACGAGCATTTCATCATTGCATTCCAATTTGCCGGTA
TCTTGGCAGTATTTTTAATCTCACAGGCAGTAACGCAGTGGAAAATTATGAAATTGATTG
CATAGCGGATACAGTGAATGAATTGCGCTTGAGTGATTACAAACGAGTAAAAAATGAAAA
ATATGATGAACTTATCAATGATTCAATTCCATATTATCTCGGTAAAATAGAAGATCAAGC
AGCAACAAAGGATGGATATTTAGCGCTTAAAGGAAAGACAACATGGGCAGATATTTATGC
AGTTGCAATATTTGATTACATACATGACTTAATGGGCTATGATATCGTAAAGGATTGTAA
AAATATCAAAAAAATTCAACAAAAAATTATGTCAGCTGATGGAGTAAAAAGATATCTAAA
AAATCGTCCAGCAGATCAAATCATAACATTTAATTAAAATTTTTAAAAAGAGAAAAAATT
TCAAAAATGTTTTTAGAATTTTGTGATTTCTTTTTAATGTTGTGGTTTATTTTTTTAAGT
TTCTTTTTTCGTTTTACAAATACAAATAAAAAATTTTTTGTATCAATGTGTAGAA

>g16418.t51 Gene=g16418 Length=168
MQTLISSIIVLTLPLGQLPLLEIDGRAFHHCIPICRYLGSIFNLTGSNAVENYEIDCIAD
TVNELRLSDYKRVKNEKYDELINDSIPYYLGKIEDQAATKDGYLALKGKTTWADIYAVAI
FDYIHDLMGYDIVKDCKNIKKIQQKIMSADGVKRYLKNRPADQIITFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g16418.t51 CDD cd03192 GST_C_Sigma_like 50 146 1.24484E-14
7 g16418.t51 Gene3D G3DSA:3.40.30.10 Glutaredoxin 12 157 2.4E-32
6 g16418.t51 Gene3D G3DSA:1.20.1050.10 - 43 148 2.4E-32
2 g16418.t51 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 12 162 3.7E-32
3 g16418.t51 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 12 162 3.7E-32
1 g16418.t51 Pfam PF14497 Glutathione S-transferase, C-terminal domain 69 159 3.8E-12
9 g16418.t51 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 46 10.581
8 g16418.t51 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 48 164 12.562
4 g16418.t51 SUPERFAMILY SSF47616 GST C-terminal domain-like 44 161 6.11E-17
5 g16418.t51 SignalP_EUK SignalP-noTM SignalP-noTM 1 16 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values