Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16418 g16418.t53 TTS g16418.t53 9389373 9389373
chr_4 g16418 g16418.t53 isoform g16418.t53 9389383 9392769
chr_4 g16418 g16418.t53 exon g16418.t53.exon1 9389383 9389843
chr_4 g16418 g16418.t53 cds g16418.t53.CDS1 9389521 9389843
chr_4 g16418 g16418.t53 exon g16418.t53.exon2 9391085 9391252
chr_4 g16418 g16418.t53 cds g16418.t53.CDS2 9391085 9391252
chr_4 g16418 g16418.t53 exon g16418.t53.exon3 9392680 9392769
chr_4 g16418 g16418.t53 cds g16418.t53.CDS3 9392680 9392716
chr_4 g16418 g16418.t53 TSS g16418.t53 9392764 9392764

Sequences

>g16418.t53 Gene=g16418 Length=719
ACGTCAGTACAGCGTTAGATTTCGAATAGTTCGCATCGTTTTTATATTGAACGATGCCAA
GTTATAAAGTCAGTTATTTTACATTCAAAGCTCTTCCACTTGGCCAACTTCCACTACTTG
AGATTGATGGACGAGCATTTCATCATTGCATTCCAATTTGCCGGTATCTTGGCAGTATTT
TTAATCTCACAGGCAGTAACGCAGTGGAAAATTATGAAATTGATTGCATAGCGGATACAG
TGAATGAATTGCGCTTGAAAATAGCAATGTGGTACTACAGTTACAAACGAGTAAAAAATG
AAAAATATGATGAACTTATCAATGATTCAATTCCATATTATCTCGGTAAAATAGAAGATC
AAGCAGCAACAAAGGATGGATATTTAGCGCTTAAAGGAAAGACAACATGGGCAGATATTT
ATGCAGTTGCAATATTTGATTACATACATGACTTAATGGGCTATGATATCGTAAAGGATT
GTAAAAATATCAAAAAAATTCAACAAAAAATTATGTCAGCTGATGGAGTAAAAAGATATC
TAAAAAATCGTCCAGCAGATCAAATCATAACATTTAATTAAAATTTTTAAAAAGAGAAAA
AATTTCAAAAATGTTTTTAGAATTTTGTGATTTCTTTTTAATGTTGTGGTTTATTTTTTT
AAGTTTCTTTTTTCGTTTTACAAATACAAATAAAAAATTTTTTGTATCAATGTGTAGAA

>g16418.t53 Gene=g16418 Length=175
MPSYKVSYFTFKALPLGQLPLLEIDGRAFHHCIPICRYLGSIFNLTGSNAVENYEIDCIA
DTVNELRLKIAMWYYSYKRVKNEKYDELINDSIPYYLGKIEDQAATKDGYLALKGKTTWA
DIYAVAIFDYIHDLMGYDIVKDCKNIKKIQQKIMSADGVKRYLKNRPADQIITFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g16418.t53 CDD cd03192 GST_C_Sigma_like 51 153 0.0000000
6 g16418.t53 Gene3D G3DSA:1.20.1050.130 - 2 174 0.0000000
2 g16418.t53 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 13 169 0.0000000
3 g16418.t53 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 13 169 0.0000000
1 g16418.t53 Pfam PF14497 Glutathione S-transferase, C-terminal domain 65 166 0.0000000
8 g16418.t53 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 1 47 11.5450000
7 g16418.t53 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 49 171 15.1180000
4 g16418.t53 SUPERFAMILY SSF52833 Thioredoxin-like 12 43 0.0000829
5 g16418.t53 SUPERFAMILY SSF47616 GST C-terminal domain-like 45 168 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values