General information for g16418.t56
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16418 is located on chr_4: 9392128..9398308 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16418 | g16418.t56 | TTS | g16418.t56 | 9389373 | 9389373 |
| chr_4 | g16418 | g16418.t56 | isoform | g16418.t56 | 9389383 | 9392769 |
| chr_4 | g16418 | g16418.t56 | exon | g16418.t56.exon1 | 9389383 | 9389843 |
| chr_4 | g16418 | g16418.t56 | cds | g16418.t56.CDS1 | 9389521 | 9389835 |
| chr_4 | g16418 | g16418.t56 | exon | g16418.t56.exon2 | 9391085 | 9391252 |
| chr_4 | g16418 | g16418.t56 | exon | g16418.t56.exon3 | 9392217 | 9392315 |
| chr_4 | g16418 | g16418.t56 | exon | g16418.t56.exon4 | 9392584 | 9392769 |
| chr_4 | g16418 | g16418.t56 | TSS | g16418.t56 | 9392764 | 9392764 |
Sequences
>g16418.t56 Gene=g16418 Length=914
ACGTCAGTACAGCGTTAGATTTCGAATAGTTCGCATCGTTTTTATATTGAACGATGCCAA
GTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTTATGCTGG
CTTATGCAAACGTTGATTTCATCGATAATCGTGTTGAGTGGGAAGATTGGCCAAAACTTA
AGCCAAGGAATTTCAAAATTGGATAAAAACAAGTGCCTTTAAATTTATCTAATATTAAAA
AATTTCTTTTAGGAAAAAAAATATTTTAAAAAATTTTTAATTTGTCTCTTCCACTTGGCC
AACTTCCACTACTTGAGATTGATGGACGAGCATTTCATCATTGCATTCCAATTTGCCGGT
ATCTTGGCAGTATTTTTAATCTCACAGGCAGTAACGCAGTGGAAAATTATGAAATTGATT
GCATAGCGGATACAGTGAATGAATTGCGCTTGAAAATAGCAATGTGGTACTACAGTTACA
AACGAGTAAAAAATGAAAAATATGATGAACTTATCAATGATTCAATTCCATATTATCTCG
GTAAAATAGAAGATCAAGCAGCAACAAAGGATGGATATTTAGCGCTTAAAGGAAAGACAA
CATGGGCAGATATTTATGCAGTTGCAATATTTGATTACATACATGACTTAATGGGCTATG
ATATCGTAAAGGATTGTAAAAATATCAAAAAAATTCAACAAAAAATTATGTCAGCTGATG
GAGTAAAAAGATATCTAAAAAATCGTCCAGCAGATCAAATCATAACATTTAATTAAAATT
TTTAAAAAGAGAAAAAATTTCAAAAATGTTTTTAGAATTTTGTGATTTCTTTTTAATGTT
GTGGTTTATTTTTTTAAGTTTCTTTTTTCGTTTTACAAATACAAATAAAAAATTTTTTGT
ATCAATGTGTAGAA
>g16418.t56 Gene=g16418 Length=104
MWYYSYKRVKNEKYDELINDSIPYYLGKIEDQAATKDGYLALKGKTTWADIYAVAIFDYI
HDLMGYDIVKDCKNIKKIQQKIMSADGVKRYLKNRPADQIITFN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16418.t56 | Gene3D | G3DSA:1.20.1050.10 | - | 2 | 99 | 0.000 |
| 2 | g16418.t56 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 3 | 98 | 0.000 |
| 3 | g16418.t56 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 3 | 98 | 0.000 |
| 1 | g16418.t56 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 5 | 95 | 0.000 |
| 6 | g16418.t56 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 100 | 12.617 |
| 4 | g16418.t56 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 1 | 97 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
