Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16418 g16418.t6 isoform g16418.t6 9389353 9392716
chr_4 g16418 g16418.t6 exon g16418.t6.exon1 9389353 9389837
chr_4 g16418 g16418.t6 TTS g16418.t6 9389373 9389373
chr_4 g16418 g16418.t6 cds g16418.t6.CDS1 9389521 9389837
chr_4 g16418 g16418.t6 exon g16418.t6.exon2 9391085 9391252
chr_4 g16418 g16418.t6 cds g16418.t6.CDS2 9391085 9391252
chr_4 g16418 g16418.t6 exon g16418.t6.exon3 9392584 9392716
chr_4 g16418 g16418.t6 cds g16418.t6.CDS3 9392584 9392716
chr_4 g16418 g16418.t6 TSS g16418.t6 9392764 9392764

Sequences

>g16418.t6 Gene=g16418 Length=786
ATGCCAAGTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTT
ATGCTGGCTTATGCAAACGTTGATTTCATCGATAATCGTGTTGAGTGGGAAGATTGGCCA
AAACTTAAGCCAACTCTTCCACTTGGCCAACTTCCACTACTTGAGATTGATGGACGAGCA
TTTCATCATTGCATTCCAATTTGCCGGTATCTTGGCAGTATTTTTAATCTCACAGGCAGT
AACGCAGTGGAAAATTATGAAATTGATTGCATAGCGGATACAGTGAATGAATTGCGCTTG
ACAATGTGGTACTACAGTTACAAACGAGTAAAAAATGAAAAATATGATGAACTTATCAAT
GATTCAATTCCATATTATCTCGGTAAAATAGAAGATCAAGCAGCAACAAAGGATGGATAT
TTAGCGCTTAAAGGAAAGACAACATGGGCAGATATTTATGCAGTTGCAATATTTGATTAC
ATACATGACTTAATGGGCTATGATATCGTAAAGGATTGTAAAAATATCAAAAAAATTCAA
CAAAAAATTATGTCAGCTGATGGAGTAAAAAGATATCTAAAAAATCGTCCAGCAGATCAA
ATCATAACATTTAATTAAAATTTTTAAAAAGAGAAAAAATTTCAAAAATGTTTTTAGAAT
TTTGTGATTTCTTTTTAATGTTGTGGTTTATTTTTTTAAGTTTCTTTTTTCGTTTTACAA
ATACAAATAAAAAATTTTTTGTATCAATGTGTAGAATAAAAAATTCTCATTTTCTCTCAA
AAATTA

>g16418.t6 Gene=g16418 Length=205
MPSYKVSYFTFKGLGEPVRFMLAYANVDFIDNRVEWEDWPKLKPTLPLGQLPLLEIDGRA
FHHCIPICRYLGSIFNLTGSNAVENYEIDCIADTVNELRLTMWYYSYKRVKNEKYDELIN
DSIPYYLGKIEDQAATKDGYLALKGKTTWADIYAVAIFDYIHDLMGYDIVKDCKNIKKIQ
QKIMSADGVKRYLKNRPADQIITFN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g16418.t6 CDD cd03039 GST_N_Sigma_like 4 72 0.000
10 g16418.t6 CDD cd03192 GST_C_Sigma_like 83 183 0.000
7 g16418.t6 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 194 0.000
6 g16418.t6 Gene3D G3DSA:1.20.1050.10 - 76 185 0.000
2 g16418.t6 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 2 199 0.000
3 g16418.t6 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 2 199 0.000
1 g16418.t6 Pfam PF14497 Glutathione S-transferase, C-terminal domain 103 196 0.000
9 g16418.t6 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 22.613
8 g16418.t6 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 81 201 14.153
12 g16418.t6 SFLD SFLDG01205 AMPS.1 1 198 0.000
13 g16418.t6 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 1 198 0.000
4 g16418.t6 SUPERFAMILY SSF52833 Thioredoxin-like 2 75 0.000
5 g16418.t6 SUPERFAMILY SSF47616 GST C-terminal domain-like 77 198 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed