General information for g16418.t85
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g16418 is located on chr_4: 9392128..9398308 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16418 | g16418.t85 | TTS | g16418.t85 | 9389373 | 9389373 |
| chr_4 | g16418 | g16418.t85 | isoform | g16418.t85 | 9389537 | 9392769 |
| chr_4 | g16418 | g16418.t85 | exon | g16418.t85.exon1 | 9389537 | 9389843 |
| chr_4 | g16418 | g16418.t85 | cds | g16418.t85.CDS1 | 9389539 | 9389835 |
| chr_4 | g16418 | g16418.t85 | exon | g16418.t85.exon2 | 9391085 | 9391502 |
| chr_4 | g16418 | g16418.t85 | exon | g16418.t85.exon3 | 9391758 | 9392769 |
| chr_4 | g16418 | g16418.t85 | TSS | g16418.t85 | 9392764 | 9392764 |
Sequences
>g16418.t85 Gene=g16418 Length=1737
ACGTCAGTACAGCGTTAGATTTCGAATAGTTCGCATCGTTTTTATATTGAACGATGCCAA
GTTATAAAGTCAGTTATTTTACATTCAAAGGTCTTGGAGAGCCAGTTCGATTTATGCTGG
CTTATGCAAACGTTGATTTCATCGATAATCGTGTTGAGTGGGAAGATTGGCCAAAACTTA
AGCCAAGTGAATTTGAAAAATCTTTCTTTTTATAACCTTTTTTGTATAAAATTCTATTTG
GAAAAATTTTTTCAAATATTTTTTCAATAAATTTTATACATGACATAAATTTTTATTCTT
TTTGAATGGCAACAAAATATTCAAAAATTTTTCACATCTCGTGAGGTGTAAAAATTTTTG
ATATTGGTATGAAAAAAATTTAATGTGCCTAAAAATTTTTAATTTTAGATTTTACAAAAC
CTGAATTGAAAGAAAGTTTCTTTTGAATTTTAAGGGAATTTCAAAATTGGATAAAAACAA
GTGCCTTTAAATTTATCTAATATTAAAAAATTTCTTTTAGGAAAAAAAATATTTTAAAAA
ATTTTTAATTTGTGTAATTTTGACTAAAATTACCAAAAAATTCTGTAGTTGAATTTGAAT
CTTTTTAAAATATAAAAATTATTGAAATATTTCTTAATTTCACTTAATTAATTGAATTAA
TAAAAAATTTCTTCAAATTTTCAAGGAGGAAACATAGAGCTTAAATTAATCTAACTCTGT
TTTATTAGTGAAACCTTTTTGAAACAAACTTGCATCATAAAAGTGTAGAACTTACTATGA
TCAATAATTTATACAAGTATTATCCAAACTGTGTACTGTGATAATGTATGCATTGCTATA
CAAACATGATAAAAAATAGTTTACTTGTTCTAAATCACTTTAAGTTTCATTTTGTGTTGT
GTAGAAATTTCAAGATTTTTAATAGTAAAAAAGTAGTTTTAAAATGTAGAAGATTATGTA
AAGCAAAAAAATTTAGAACACTAGTAAAAAGTAAAAAAATTGCTTACATTGTTGAAATTT
GAAACTTTTGGTTGAAAAAAAAATTGTCTGTAAAAAATTGCGAAATTTTATGAAATTTAA
AAATTTCTGCTTTTCTCAGGAACAAATTGTTAGAATTTTTTTAATTTTATTAATTTTTAA
TTTAAATATTTCTTCTAACTAGACAATTTTGATACTTGTTGAATAACCAAAATTTAAGCT
CTATATTTTCTCCTAAAACTGCATTTTTAGAAACAGAAATAAAAATAATTATATTTACCT
AGCTCTTCCACTTGGCCAACTTCCACTACTTGAGATTGATGGACGAGCATTTCATCATTG
CATTCCAATTTGCCGGTATCTTGGCAGTATTTTTAATCTCACAGGCAGTAACGCAGTGGA
AAATTATGAAATTGATTGCATAGCGGATACAGTGAATGAATTGCGCTTGAAAATAGCAAT
GTGGTACTACAGTTACAAACGAGTAAAAAATGAAAAATATGATGAACTTATCAATGATTC
AATTCCATATTATCTCGGTAAAATAGAAGATCAAGCAGCAACAAAGGATGGATATTTAGC
GCTTAAAGGAAAGACAACATGGGCAGATATTTATGCAGTTGCAATATTTGATTACATACA
TGACTTAATGGGCTATGATATCGTAAAGGATTGTAAAAATATCAAAAAAATTCAACAAAA
AATTATGTCAGCTGATGGAGTAAAAAGATATCTAAAAAATCGTCCAGCAGATCAAAT
>g16418.t85 Gene=g16418 Length=99
MWYYSYKRVKNEKYDELINDSIPYYLGKIEDQAATKDGYLALKGKTTWADIYAVAIFDYI
HDLMGYDIVKDCKNIKKIQQKIMSADGVKRYLKNRPADQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g16418.t85 | Gene3D | G3DSA:1.20.1050.10 | - | 2 | 99 | 0.000 |
| 2 | g16418.t85 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 3 | 97 | 0.000 |
| 3 | g16418.t85 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 3 | 97 | 0.000 |
| 1 | g16418.t85 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 5 | 95 | 0.000 |
| 6 | g16418.t85 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 99 | 12.501 |
| 4 | g16418.t85 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 1 | 97 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
