Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16419 g16419.t17 TTS g16419.t17 9392821 9392821
chr_4 g16419 g16419.t17 isoform g16419.t17 9392882 9395632
chr_4 g16419 g16419.t17 exon g16419.t17.exon1 9392882 9393198
chr_4 g16419 g16419.t17 cds g16419.t17.CDS1 9393108 9393198
chr_4 g16419 g16419.t17 exon g16419.t17.exon2 9394136 9394307
chr_4 g16419 g16419.t17 cds g16419.t17.CDS2 9394136 9394307
chr_4 g16419 g16419.t17 exon g16419.t17.exon3 9395500 9395632
chr_4 g16419 g16419.t17 cds g16419.t17.CDS3 9395500 9395632
chr_4 g16419 g16419.t17 TSS g16419.t17 9395732 9395732

Sequences

>g16419.t17 Gene=g16419 Length=622
ATGGTGGTTTACAAATTACATTATTTTAATTTAACTGGTTTGGGTGAACCGATTCGATTT
TTATTCCATTATGGTGGAATTGATTTTGAAGATGTGAGGTATGAAATGAATGAATGGGTC
GATCTTAAAAAAAAATTCCCTCTTGGTCAATTACCAGTCTTAGAAATAGACGACAAAGAG
CATGTTCAATCAATGGCAATTTGTCGCTATTTAGCAAAACAAGTCGGTCTTGCTGGAGAC
AGTGACCTTGAAAACATGGAAATTGATGCGGTTGTTGATACTTTCAATGATATTCGTCTT
AGTAAAAATTTCAACTGTGATGTGGGAACAAAATCAGGAAGTAAAAAAAGAGAAACAAAA
AATTCTACACGAGCAGCAAATTCCATTTTATTTTAAGAAGCTTGATGAATATGCCGAAGC
CAATAATGGACATTTTGCATGTAAAAAATTAACTTGGGCTGACTTGTACATCGCATCTTG
GTCAAAGTATTTCTCTTATGCCATCAAAGAAGTCTTCAATGATTATGAAAACTATCCAAA
CATTAAGAAAGTTGTCGACAATGTTTTAGCAATTGAAAACATTAAAAAATGGGTTGAAAC
AAGACCCGACACATTCTGTTGA

>g16419.t17 Gene=g16419 Length=131
MVVYKLHYFNLTGLGEPIRFLFHYGGIDFEDVRYEMNEWVDLKKKFPLGQLPVLEIDDKE
HVQSMAICRYLAKQVGLAGDSDLENMEIDAVVDTFNDIRLSKNFNCDVGTKSGSKKRETK
NSTRAANSILF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16419.t17 CDD cd03039 GST_N_Sigma_like 4 73 2.27879E-38
6 g16419.t17 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 75 3.4E-45
5 g16419.t17 Gene3D G3DSA:1.20.1050.10 - 76 123 3.4E-45
8 g16419.t17 MobiDBLite mobidb-lite consensus disorder prediction 111 131 -
2 g16419.t17 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 3 102 7.4E-40
3 g16419.t17 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 3 102 7.4E-40
1 g16419.t17 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 72 6.0E-13
9 g16419.t17 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 28.303
10 g16419.t17 SFLD SFLDG01205 AMPS.1 1 119 2.242E-44
11 g16419.t17 SFLD SFLDG00363 AMPS (cytGST): Alpha-, Mu-, Pi-, and Sigma-like 1 119 2.242E-44
4 g16419.t17 SUPERFAMILY SSF52833 Thioredoxin-like 1 75 9.61E-23

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed