Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16419 g16419.t9 TTS g16419.t9 9392821 9392821
chr_4 g16419 g16419.t9 isoform g16419.t9 9392826 9395632
chr_4 g16419 g16419.t9 exon g16419.t9.exon1 9392826 9393057
chr_4 g16419 g16419.t9 cds g16419.t9.CDS1 9392882 9393057
chr_4 g16419 g16419.t9 exon g16419.t9.exon2 9394140 9394307
chr_4 g16419 g16419.t9 cds g16419.t9.CDS2 9394140 9394307
chr_4 g16419 g16419.t9 exon g16419.t9.exon3 9395500 9395632
chr_4 g16419 g16419.t9 cds g16419.t9.CDS3 9395500 9395632
chr_4 g16419 g16419.t9 TSS g16419.t9 9395732 9395732

Sequences

>g16419.t9 Gene=g16419 Length=533
ATGGTGGTTTACAAATTACATTATTTTAATTTAACTGGTTTGGGTGAACCGATTCGATTT
TTATTCCATTATGGTGGAATTGATTTTGAAGATGTGAGGTATGAAATGAATGAATGGGTC
GATCTTAAAAAAAAATTCCCTCTTGGTCAATTACCAGTCTTAGAAATAGACGACAAAGAG
CATGTTCAATCAATGGCAATTTGTCGCTATTTAGCAAAACAAGTCGGTCTTGCTGGAGAC
AGTGACCTTGAAAACATGGAAATTGATGCGGTTGTTGATACTTTCAATGATATTCGTCTT
AAATTAACTTGGGCTGACTTGTACATCGCATCTTGGTCAAAGTATTTCTCTTATGCCATC
AAAGAAGTCTTCAATGATTATGAAAACTATCCAAACATTAAGAAAGTTGTCGACAATGTT
TTAGCAATTGAAAACATTAAAAAATGGGTTGAAACAAGACCCGACACATTCTGTTGAAAG
GAAATTTTTTTTCGCGAATAAATTCTTAATAAAACGAATACGCACTAATGTTT

>g16419.t9 Gene=g16419 Length=158
MVVYKLHYFNLTGLGEPIRFLFHYGGIDFEDVRYEMNEWVDLKKKFPLGQLPVLEIDDKE
HVQSMAICRYLAKQVGLAGDSDLENMEIDAVVDTFNDIRLKLTWADLYIASWSKYFSYAI
KEVFNDYENYPNIKKVVDNVLAIENIKKWVETRPDTFC

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g16419.t9 CDD cd03039 GST_N_Sigma_like 4 73 0.0000000
11 g16419.t9 Gene3D G3DSA:3.40.30.10 Glutaredoxin 4 75 0.0000000
10 g16419.t9 Gene3D G3DSA:1.20.1050.10 - 76 100 0.0000000
9 g16419.t9 Gene3D G3DSA:1.20.1050.10 - 101 157 0.0000000
4 g16419.t9 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 3 102 0.0000000
6 g16419.t9 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 3 102 0.0000000
3 g16419.t9 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 101 156 0.0000000
5 g16419.t9 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 101 156 0.0000000
1 g16419.t9 Pfam PF02798 Glutathione S-transferase, N-terminal domain 5 72 0.0000000
2 g16419.t9 Pfam PF14497 Glutathione S-transferase, C-terminal domain 101 153 0.0000001
12 g16419.t9 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 1 158 10.5100000
13 g16419.t9 ProSiteProfiles PS50404 Soluble glutathione S-transferase N-terminal domain profile. 2 79 28.3030000
15 g16419.t9 SFLD SFLDS00019 Glutathione Transferase (cytosolic) 4 96 0.0000000
7 g16419.t9 SUPERFAMILY SSF52833 Thioredoxin-like 1 75 0.0000000
8 g16419.t9 SUPERFAMILY SSF47616 GST C-terminal domain-like 77 156 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006749 glutathione metabolic process BP
GO:0005515 protein binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values