General information for g16420.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g16420 is located on chr_4: 9397426..9398308 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16420 | g16420.t11 | TSS | g16420.t11 | 9395189 | 9395189 |
| chr_4 | g16420 | g16420.t11 | isoform | g16420.t11 | 9395312 | 9398308 |
| chr_4 | g16420 | g16420.t11 | exon | g16420.t11.exon1 | 9395312 | 9396932 |
| chr_4 | g16420 | g16420.t11 | exon | g16420.t11.exon2 | 9397154 | 9398308 |
| chr_4 | g16420 | g16420.t11 | cds | g16420.t11.CDS1 | 9398009 | 9398308 |
| chr_4 | g16420 | g16420.t11 | TTS | g16420.t11 | 9398408 | 9398408 |
Sequences
>g16420.t11 Gene=g16420 Length=2776
TCATAAAATTTTCCAAAAAAAACGAAAGATGAACAGTTTTAAATTTTAAAAGAATTTTAT
TTTTTATTCCCTAATAAAATTTTCATTTTATATTTTTAAATTTAAGAAATTGTTACATTT
TATTAAATTCTAAATGATTAAAAATTTTTTTATTTTAAATTCAAAACATTAAAGAATATT
TTACTTACTTTTTTTAAGATCGACCCATTCATTCATTTCATACCTCACATCTTCAAAATC
AATTCCACCATAATGGAATAAAAATCGAATCGGTTCACCCAAACCAGTTAAATTAAAATA
ATGTAATTTGTAAACCACCATTTTTAAATAGTTCTCAAAAAATCAATCAAATAAAAAAAA
ATTCAAGAATTTTCTCCCTTTTAAAGCTAATTCTTAACTGATCAAGTGACGAAAACGGAC
TGAACTTAAAACATGAGAAAAGAGAGAAAAACTTAATTGCGATTAGCCGAGGAAATAATT
TTTTTACTCACATATACAACCATCATGATAAAAAATGAGAATAATATTCTTTTCTAGCAA
AAACAAAAACACATTCTGTAATTCAATGAATAAAAATATATTTGCAGTGGAATTTTCCTC
CACGCGCTGCATTCGGTGACTAAACCGATTTGTAATATTTGAAATATTTTCTCTGCCCTT
TTTACAACATTTTTCCTCAAAAAACTTTCCATTCTAACATCGCAAAAAGAGAAAATGTTT
CGAAAAATGAAGGTTACATCAGAAACCGGCAAACATCTGATTTTAAAGGTAACAACGCAC
AAAAAACACATAGAAATAAATTCTACAACAACAACGAAGAAAATAATCATTTTATTATAA
ATTTAAGCTGACCTTGAACTTCAACTGATGTTTTTGTGTGATGTGTGAAAATACACAAAA
CAAATGTGTGTCACGAGAATTGAAGCAACATGTGTTTATAAACATGGATTTTTGAAGGAC
AAATAATTATTTTTAAACCGTTTAAATTTTTTCTTAAAATGAATAAATTATATAAATTGC
AAGGGTTGTGAACTTTATCGAAAATTTCATCAAATTATCAAAAAATCCATCAAGTAAATA
AAAAATTTTTTGATTTTCAATAGTTATTTTGTTATAATTATCAAGAGCTTTTACCTCATG
ATAAATAGATTAGAGTTATGAATACTAATTAAATTTAATGTGATTAACTTTTTTGACAAA
GAAATTTTTTATAAAATTTAAAATTTTTTGGTAATTTACAAAAAATCAGAAGCGTTCAAG
TAAAAATTTTGCATTGTTAACTAAAAATATCAATAAGTTGTCACCTAAGGACTTCAACAA
TGATATGACTGAGATAAAAACATAGGTAATTTAACTTTATCAAAATGTAGAAGAAAAATT
ATTTATTATTTATTTAGATGACTTGCACATAAATTAATATCAACATCAGTATGTGTGACA
ACCAAAAGATTTTTCTGCCAAACTAAAATTGTTTCATGTAGTAAATAAAAAACTTAAATT
GAATGACATGCGAAATGAATTAAAAAATGTTTGTGATGATTTTAAAAAAGCTTTTGTTGA
GGGAGTAAATTGAAATTTATTGGATTTTTTTATGGAGATGTTTGAGATTTGTCCCTATAA
ATTATAAAATAATTTTATCCGTAAACGAATTAAATTTTGATTTTTTCCAGGACAATTTTG
TGCTCTTTTACCATGCAGAAATCACCCATAAATGGTTATAAATTAAAATATATCATGATT
TTACATCATTTAAAAATTTCACTAATACAAAGGCATTTTTCAATTGCCGGTTCTTGTTTT
AAAAACTCTCAGCATTTACTCAATTTTTATTTCAGTTCTCTCTGAGTTGTATTTTGAGTT
AGTTTGAATTTTAAGAAGAAAAGTATTTTAAAAATGACTTACAAACTTTATTATTTTAAT
TTTCGTGGTTTGGCTGAGCCAATTCGATATTTATTGAAATATGGAAAAATTGATTTTGAA
GATGTTCGATTTGAGAGAGAAGATTGGCCAAAACTTAAATCAAGTAAGAAAATTAAGTAA
AATATATTTTTGGAAGTTTGCCTATTTTTCAGTCAGCAATTTGAAAAATTTTTATTTACA
TTGTTATAACTGAAAGATGAAACTCGAAAATGATGTTTTTAGAAAAATGAACCAACTTTG
TTATAACTTTCAAATTATGGACAAAAATATTAATTTTTATTCTATCAATAAAGCAATGCC
CATGGGTCAAGTGCCAGTTCTTGAAATTGACGGCAAAAGAGTCTACCAATCAGTTTCAAT
TGCTCGCTTCTTAGGCAAGAAAGTTGGACTAGCTGGCAGCAATGATTTAGAAAATCTTGA
AATCGATAGTGTTGTTGACAGTTTCGTTGATTTAAGATTGAGTAAGTTTTGAATTTTATA
AAAATTCAAATTTAAATTTTTTATTTTATTAACATAAATTAATTTTTATATTTGTCCCAC
AGAAGTCACAGCAGTAATGACAACACCAGAAGATAAAAAAGCAGAAGCCATGAAAATACT
CAAAGAAGAAACAGTTCCATTTTTCTTATCAAAACTCAATGCATTAGCTGAAGAAAACAA
TGGACATTTGGCATGCAAGAAACTCACTTGGGCTGATTTTTATTTCGCTGCTCTTAAAGG
TGTTGTTGAATTTGGTGCAATTGAAGGTGAAGATATTTGGGCAAAATATCCAGCATTGAG
AAAAGTTGTCGATAATGTTGAGGCGATTGATGCAATTAAAACATGGATTAATGAACGACC
TGTTACTCAATTTTGA
>g16420.t11 Gene=g16420 Length=99
MTTPEDKKAEAMKILKEETVPFFLSKLNALAEENNGHLACKKLTWADFYFAALKGVVEFG
AIEGEDIWAKYPALRKVVDNVEAIDAIKTWINERPVTQF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16420.t11 | CDD | cd03192 | GST_C_Sigma_like | 5 | 81 | 0.000 |
| 5 | g16420.t11 | Gene3D | G3DSA:1.20.1050.10 | - | 1 | 83 | 0.000 |
| 2 | g16420.t11 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 4 | 99 | 0.000 |
| 3 | g16420.t11 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 4 | 99 | 0.000 |
| 1 | g16420.t11 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 5 | 94 | 0.000 |
| 6 | g16420.t11 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 99 | 14.264 |
| 4 | g16420.t11 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 4 | 99 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
