Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Glutathione S-transferase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_4 g16420 g16420.t14 TSS g16420.t14 9395896 9395896
chr_4 g16420 g16420.t14 isoform g16420.t14 9396680 9398308
chr_4 g16420 g16420.t14 exon g16420.t14.exon1 9396680 9396924
chr_4 g16420 g16420.t14 exon g16420.t14.exon2 9397154 9398308
chr_4 g16420 g16420.t14 cds g16420.t14.CDS1 9398009 9398308
chr_4 g16420 g16420.t14 TTS g16420.t14 9398408 9398408

Sequences

>g16420.t14 Gene=g16420 Length=1400
AGAAGAAAAATTATTTATTATTTATTTAGATGACTTGCACATAAATTAATATCAACATCA
GTATGTGTGACAACCAAAAGATTTTTCTGCCAAACTAAAATTGTTTCATGTAGTAAATAA
AAAACTTAAATTGAATGACATGCGAAATGAATTAAAAAATGTTTGTGATGATTTTAAAAA
AGCTTTTGTTGAGGGAGTAAATTGAAATTTATTGGATTTTTTTATGGAGATGTTTGAGAT
TTGTCTTATAAAATAATTTTATCCGTAAACGAATTAAATTTTGATTTTTTCCAGGACAAT
TTTGTGCTCTTTTACCATGCAGAAATCACCCATAAATGGTTATAAATTAAAATATATCAT
GATTTTACATCATTTAAAAATTTCACTAATACAAAGGCATTTTTCAATTGCCGGTTCTTG
TTTTAAAAACTCTCAGCATTTACTCAATTTTTATTTCAGTTCTCTCTGAGTTGTATTTTG
AGTTAGTTTGAATTTTAAGAAGAAAAGTATTTTAAAAATGACTTACAAACTTTATTATTT
TAATTTTCGTGGTTTGGCTGAGCCAATTCGATATTTATTGAAATATGGAAAAATTGATTT
TGAAGATGTTCGATTTGAGAGAGAAGATTGGCCAAAACTTAAATCAAGTAAGAAAATTAA
GTAAAATATATTTTTGGAAGTTTGCCTATTTTTCAGTCAGCAATTTGAAAAATTTTTATT
TACATTGTTATAACTGAAAGATGAAACTCGAAAATGATGTTTTTAGAAAAATGAACCAAC
TTTGTTATAACTTTCAAATTATGGACAAAAATATTAATTTTTATTCTATCAATAAAGCAA
TGCCCATGGGTCAAGTGCCAGTTCTTGAAATTGACGGCAAAAGAGTCTACCAATCAGTTT
CAATTGCTCGCTTCTTAGGCAAGAAAGTTGGACTAGCTGGCAGCAATGATTTAGAAAATC
TTGAAATCGATAGTGTTGTTGACAGTTTCGTTGATTTAAGATTGAGTAAGTTTTGAATTT
TATAAAAATTCAAATTTAAATTTTTTATTTTATTAACATAAATTAATTTTTATATTTGTC
CCACAGAAGTCACAGCAGTAATGACAACACCAGAAGATAAAAAAGCAGAAGCCATGAAAA
TACTCAAAGAAGAAACAGTTCCATTTTTCTTATCAAAACTCAATGCATTAGCTGAAGAAA
ACAATGGACATTTGGCATGCAAGAAACTCACTTGGGCTGATTTTTATTTCGCTGCTCTTA
AAGGTGTTGTTGAATTTGGTGCAATTGAAGGTGAAGATATTTGGGCAAAATATCCAGCAT
TGAGAAAAGTTGTCGATAATGTTGAGGCGATTGATGCAATTAAAACATGGATTAATGAAC
GACCTGTTACTCAATTTTGA

>g16420.t14 Gene=g16420 Length=99
MTTPEDKKAEAMKILKEETVPFFLSKLNALAEENNGHLACKKLTWADFYFAALKGVVEFG
AIEGEDIWAKYPALRKVVDNVEAIDAIKTWINERPVTQF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g16420.t14 CDD cd03192 GST_C_Sigma_like 5 81 0.000
5 g16420.t14 Gene3D G3DSA:1.20.1050.10 - 1 83 0.000
2 g16420.t14 PANTHER PTHR11571:SF234 GLUTATHIONE S-TRANSFERASE S1 4 99 0.000
3 g16420.t14 PANTHER PTHR11571 GLUTATHIONE S-TRANSFERASE 4 99 0.000
1 g16420.t14 Pfam PF14497 Glutathione S-transferase, C-terminal domain 5 94 0.000
6 g16420.t14 ProSiteProfiles PS50405 Soluble glutathione S-transferase C-terminal domain profile. 1 99 14.264
4 g16420.t14 SUPERFAMILY SSF47616 GST C-terminal domain-like 4 99 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed