General information for g16420.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g16420 is located on chr_4: 9397426..9398308 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16420 | g16420.t16 | TSS | g16420.t16 | 9395896 | 9395896 |
| chr_4 | g16420 | g16420.t16 | isoform | g16420.t16 | 9396921 | 9398308 |
| chr_4 | g16420 | g16420.t16 | exon | g16420.t16.exon1 | 9396921 | 9396926 |
| chr_4 | g16420 | g16420.t16 | exon | g16420.t16.exon2 | 9397154 | 9398308 |
| chr_4 | g16420 | g16420.t16 | cds | g16420.t16.CDS1 | 9398009 | 9398308 |
| chr_4 | g16420 | g16420.t16 | TTS | g16420.t16 | 9398408 | 9398408 |
Sequences
>g16420.t16 Gene=g16420 Length=1161
TGTCCCTTATAAAATAATTTTATCCGTAAACGAATTAAATTTTGATTTTTTCCAGGACAA
TTTTGTGCTCTTTTACCATGCAGAAATCACCCATAAATGGTTATAAATTAAAATATATCA
TGATTTTACATCATTTAAAAATTTCACTAATACAAAGGCATTTTTCAATTGCCGGTTCTT
GTTTTAAAAACTCTCAGCATTTACTCAATTTTTATTTCAGTTCTCTCTGAGTTGTATTTT
GAGTTAGTTTGAATTTTAAGAAGAAAAGTATTTTAAAAATGACTTACAAACTTTATTATT
TTAATTTTCGTGGTTTGGCTGAGCCAATTCGATATTTATTGAAATATGGAAAAATTGATT
TTGAAGATGTTCGATTTGAGAGAGAAGATTGGCCAAAACTTAAATCAAGTAAGAAAATTA
AGTAAAATATATTTTTGGAAGTTTGCCTATTTTTCAGTCAGCAATTTGAAAAATTTTTAT
TTACATTGTTATAACTGAAAGATGAAACTCGAAAATGATGTTTTTAGAAAAATGAACCAA
CTTTGTTATAACTTTCAAATTATGGACAAAAATATTAATTTTTATTCTATCAATAAAGCA
ATGCCCATGGGTCAAGTGCCAGTTCTTGAAATTGACGGCAAAAGAGTCTACCAATCAGTT
TCAATTGCTCGCTTCTTAGGCAAGAAAGTTGGACTAGCTGGCAGCAATGATTTAGAAAAT
CTTGAAATCGATAGTGTTGTTGACAGTTTCGTTGATTTAAGATTGAGTAAGTTTTGAATT
TTATAAAAATTCAAATTTAAATTTTTTATTTTATTAACATAAATTAATTTTTATATTTGT
CCCACAGAAGTCACAGCAGTAATGACAACACCAGAAGATAAAAAAGCAGAAGCCATGAAA
ATACTCAAAGAAGAAACAGTTCCATTTTTCTTATCAAAACTCAATGCATTAGCTGAAGAA
AACAATGGACATTTGGCATGCAAGAAACTCACTTGGGCTGATTTTTATTTCGCTGCTCTT
AAAGGTGTTGTTGAATTTGGTGCAATTGAAGGTGAAGATATTTGGGCAAAATATCCAGCA
TTGAGAAAAGTTGTCGATAATGTTGAGGCGATTGATGCAATTAAAACATGGATTAATGAA
CGACCTGTTACTCAATTTTGA
>g16420.t16 Gene=g16420 Length=99
MTTPEDKKAEAMKILKEETVPFFLSKLNALAEENNGHLACKKLTWADFYFAALKGVVEFG
AIEGEDIWAKYPALRKVVDNVEAIDAIKTWINERPVTQF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16420.t16 | CDD | cd03192 | GST_C_Sigma_like | 5 | 81 | 0.000 |
| 5 | g16420.t16 | Gene3D | G3DSA:1.20.1050.10 | - | 1 | 83 | 0.000 |
| 2 | g16420.t16 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 4 | 99 | 0.000 |
| 3 | g16420.t16 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 4 | 99 | 0.000 |
| 1 | g16420.t16 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 5 | 94 | 0.000 |
| 6 | g16420.t16 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 99 | 14.264 |
| 4 | g16420.t16 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 4 | 99 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
