General information for g16420.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutathione S-transferase.
Parent gene
- The parent gene g16420 is located on chr_4: 9397426..9398308 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_4 | g16420 | g16420.t17 | isoform | g16420.t17 | 9396932 | 9398308 |
| chr_4 | g16420 | g16420.t17 | exon | g16420.t17.exon1 | 9396932 | 9398308 |
| chr_4 | g16420 | g16420.t17 | cds | g16420.t17.CDS1 | 9398009 | 9398308 |
| chr_4 | g16420 | g16420.t17 | TTS | g16420.t17 | 9398408 | 9398408 |
| chr_4 | g16420 | g16420.t17 | TSS | g16420.t17 | NA | NA |
Sequences
>g16420.t17 Gene=g16420 Length=1377
AGTCAAATTTATTTGCCTTACGCAAAATTTATGTGTTATAAATTTTTTTATGACAGTTAT
AAAAGTTTTATAACAGTAATAAATATTTATAACAGTATAACAAAATTATCACTATTACAA
AACTTTTATAACTGTTATACAAAAATTTATAAAATATATATTTTCTTTTTAAGGCTAATA
AGTTTGACTTAATAGGAACAAATCTTAAAAATTTTATGTCAGTTATAAAATAATTTTATC
CGTAAACGAATTAAATTTTGATTTTTTCCAGGACAATTTTGTGCTCTTTTACCATGCAGA
AATCACCCATAAATGGTTATAAATTAAAATATATCATGATTTTACATCATTTAAAAATTT
CACTAATACAAAGGCATTTTTCAATTGCCGGTTCTTGTTTTAAAAACTCTCAGCATTTAC
TCAATTTTTATTTCAGTTCTCTCTGAGTTGTATTTTGAGTTAGTTTGAATTTTAAGAAGA
AAAGTATTTTAAAAATGACTTACAAACTTTATTATTTTAATTTTCGTGGTTTGGCTGAGC
CAATTCGATATTTATTGAAATATGGAAAAATTGATTTTGAAGATGTTCGATTTGAGAGAG
AAGATTGGCCAAAACTTAAATCAAGTAAGAAAATTAAGTAAAATATATTTTTGGAAGTTT
GCCTATTTTTCAGTCAGCAATTTGAAAAATTTTTATTTACATTGTTATAACTGAAAGATG
AAACTCGAAAATGATGTTTTTAGAAAAATGAACCAACTTTGTTATAACTTTCAAATTATG
GACAAAAATATTAATTTTTATTCTATCAATAAAGCAATGCCCATGGGTCAAGTGCCAGTT
CTTGAAATTGACGGCAAAAGAGTCTACCAATCAGTTTCAATTGCTCGCTTCTTAGGCAAG
AAAGTTGGACTAGCTGGCAGCAATGATTTAGAAAATCTTGAAATCGATAGTGTTGTTGAC
AGTTTCGTTGATTTAAGATTGAGTAAGTTTTGAATTTTATAAAAATTCAAATTTAAATTT
TTTATTTTATTAACATAAATTAATTTTTATATTTGTCCCACAGAAGTCACAGCAGTAATG
ACAACACCAGAAGATAAAAAAGCAGAAGCCATGAAAATACTCAAAGAAGAAACAGTTCCA
TTTTTCTTATCAAAACTCAATGCATTAGCTGAAGAAAACAATGGACATTTGGCATGCAAG
AAACTCACTTGGGCTGATTTTTATTTCGCTGCTCTTAAAGGTGTTGTTGAATTTGGTGCA
ATTGAAGGTGAAGATATTTGGGCAAAATATCCAGCATTGAGAAAAGTTGTCGATAATGTT
GAGGCGATTGATGCAATTAAAACATGGATTAATGAACGACCTGTTACTCAATTTTGA
>g16420.t17 Gene=g16420 Length=99
MTTPEDKKAEAMKILKEETVPFFLSKLNALAEENNGHLACKKLTWADFYFAALKGVVEFG
AIEGEDIWAKYPALRKVVDNVEAIDAIKTWINERPVTQF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g16420.t17 | CDD | cd03192 | GST_C_Sigma_like | 5 | 81 | 0.000 |
| 5 | g16420.t17 | Gene3D | G3DSA:1.20.1050.10 | - | 1 | 83 | 0.000 |
| 2 | g16420.t17 | PANTHER | PTHR11571:SF234 | GLUTATHIONE S-TRANSFERASE S1 | 4 | 99 | 0.000 |
| 3 | g16420.t17 | PANTHER | PTHR11571 | GLUTATHIONE S-TRANSFERASE | 4 | 99 | 0.000 |
| 1 | g16420.t17 | Pfam | PF14497 | Glutathione S-transferase, C-terminal domain | 5 | 94 | 0.000 |
| 6 | g16420.t17 | ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 1 | 99 | 14.264 |
| 4 | g16420.t17 | SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 4 | 99 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
